Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Forward (+)

5546162 .. 5547439

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGAGGAGGAGGGCCGCAGAAGGCTCGATCGGAGCAGGCGGAGTCGTTATCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGATGACAGTGACGAAGAAAATGCATCCAAGGAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGAGGAGGATTGACTTCTCTGGGATCAATGGGTTCTCTAGAAGATTCTCTTCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGCTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTCTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCATCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCATCCTTAAATGAAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCAAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCTAGGAGTTGCTATTGTCTCTCAGATCTGCAAGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

25.72

Weight (kDa)

5.09

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	6 cut(s)	29, 102, 105, 119, 143, 399
AclWI	GGATC	6 cut(s)	12, 25, 98, 216, 229, 301
AcoI	YGGCCR	1 cut(s)	268
AcyI	GRCGYC	2 cut(s)	66, 231
AfiI	CCNNNNNNNGG	4 cut(s)	177, 330, 474, 608
AgsI	TTSAA	3 cut(s)	442, 679, 688
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	3 cut(s)	98, 418, 684
AluI	AGCT	3 cut(s)	98, 418, 684
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	6 cut(s)	12, 25, 98, 216, 229, 301
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	116, 268, 610
Asp700I	GAANNNNTTC	3 cut(s)	347, 437, 683
AspS9I	GGNCC	2 cut(s)	116, 477
AsuHPI	GGTGA	2 cut(s)	239, 421
AvaII	GGWCC	1 cut(s)	477
BamHI	GGATCC	2 cut(s)	17, 221
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	603
BccI	CCATC	3 cut(s)	182, 332, 610
BceAI	ACGGC	3 cut(s)	51, 79, 283
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 188, 222
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	3 cut(s)	308, 539, 693
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	3 cut(s)	30, 103, 119
BlsI	GCNGC	3 cut(s)	31, 104, 120
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	116, 477
BmiI	GGNNCC	3 cut(s)	19, 183, 223
BmsI	GCATC	2 cut(s)	218, 551
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	66, 231
BsaJI	CCNNGG	3 cut(s)	24, 213, 271
BsaWI	WCCGGW	2 cut(s)	184, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 330, 474, 608
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	24, 213, 271
BseGI	GGATG	3 cut(s)	193, 209, 542
BseLI	CCNNNNNNNGG	4 cut(s)	177, 330, 474, 608
BseMII	CTCAG	2 cut(s)	366, 726
BseRI	GAGGAG	5 cut(s)	123, 126, 260, 288, 463
BseX3I	CGGCCG	1 cut(s)	268
Bsh1285I	CGRYCG	2 cut(s)	134, 271
BshFI	GGCC	3 cut(s)	118, 270, 612
BsiEI	CGRYCG	2 cut(s)	134, 271
BsiSI	CCGG	2 cut(s)	185, 225
BslI	CCNNNNNNNGG	4 cut(s)	177, 330, 474, 608
BsmAI	GTCTC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	118, 270, 612
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
BspACI	CCGC	6 cut(s)	29, 102, 105, 119, 143, 399
BspANI	GGCC	3 cut(s)	118, 270, 612
BspCNI	CTCAG	2 cut(s)	365, 725
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	19, 183, 223
BspPI	GGATC	6 cut(s)	12, 25, 98, 216, 229, 301
BspQI	GCTCTTC	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	24, 213, 271
BssMI	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
BssNI	GRCGYC	2 cut(s)	66, 231
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	194, 409
Bst6I	CTCTTC	3 cut(s)	324, 419, 674
BstACI	GRCGYC	2 cut(s)	66, 231
BstC8I	GCNNGC	2 cut(s)	100, 141
BstDEI	CTNAG	2 cut(s)	352, 712
BstF5I	GGATG	3 cut(s)	193, 209, 542
BstKTI	GATC	7 cut(s)	20, 93, 134, 224, 296, 465, 718
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
BstMCI	CGRYCG	2 cut(s)	134, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	3 cut(s)	17, 221, 715
BstYI	RGATCY	3 cut(s)	17, 221, 715
BstZI	CGGCCG	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	118, 270, 612
BtsCI	GGATG	3 cut(s)	193, 209, 542
BtsIMutI	CAGTG	2 cut(s)	199, 234
Cac8I	GCNNGC	2 cut(s)	100, 141
Cfr13I	GGNCC	2 cut(s)	116, 477
CseI	GACGC	1 cut(s)	55
CviAII	CATG	3 cut(s)	529, 643, 729
CviJI	RGCY	9 cut(s)	38, 98, 118, 128, 182, 270, 418, 612, 684
CviKI_1	RGCY	9 cut(s)	38, 98, 118, 128, 182, 270, 418, 612, 684
DdeI	CTNAG	2 cut(s)	352, 712
DpnI	GATC	7 cut(s)	19, 92, 133, 223, 295, 464, 717
DpnII	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
EaeI	YGGCCR	1 cut(s)	268
EagI	CGGCCG	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	324, 419, 674
EarI	CTCTTC	3 cut(s)	324, 419, 674
EciI	GGCGGA	2 cut(s)	120, 158
EclXI	CGGCCG	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	477
Eco52I	CGGCCG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	532, 646, 732
FaiI	YATR	3 cut(s)	530, 644, 730
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	528, 642, 728
Fnu4HI	GCNGC	3 cut(s)	30, 103, 119
FokI	GGATG	3 cut(s)	196, 200, 529
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	30, 103, 119
FspBI	CTAG	3 cut(s)	308, 539, 693
GluI	GCNGC	3 cut(s)	30, 103, 119
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	118, 270, 612
HapII	CCGG	2 cut(s)	185, 225
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	66, 231
Hin1II	CATG	3 cut(s)	532, 646, 732
HinfI	GANTC	2 cut(s)	146, 314
HpaII	CCGG	2 cut(s)	185, 225
HphI	GGTGA	2 cut(s)	239, 421
Hpy188I	TCNGA	7 cut(s)	95, 136, 255, 385, 625, 650, 715
Hpy188III	TCNNGA	6 cut(s)	185, 308, 328, 354, 460, 480
Hpy99I	CGWCG	5 cut(s)	37, 71, 409, 493, 496
HpyAV	CCTTC	4 cut(s)	118, 212, 406, 447
HpyCH4III	ACNGT	2 cut(s)	194, 409
HpyCH4IV	ACGT	2 cut(s)	6, 231
HpyCH4V	TGCA	2 cut(s)	209, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	352, 712
HpySE526I	ACGT	2 cut(s)	6, 231
Hsp92I	GRCGYC	2 cut(s)	66, 231
Hsp92II	CATG	3 cut(s)	532, 646, 732
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	4 cut(s)	95, 136, 187, 415
LweI	GCATC	2 cut(s)	218, 551
MaeI	CTAG	3 cut(s)	308, 539, 693
MaeII	ACGT	2 cut(s)	6, 231
MaeIII	GTNAC	4 cut(s)	194, 227, 232, 391
MalI	GATC	7 cut(s)	19, 92, 133, 223, 295, 464, 717
MboI	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
MflI	RGATCY	3 cut(s)	17, 221, 715
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	659
MlyI	GAGTC	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	3 cut(s)	347, 437, 683
MseI	TTAA	2 cut(s)	264, 548
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	2 cut(s)	185, 225
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
NlaIII	CATG	3 cut(s)	532, 646, 732
NlaIV	GGNNCC	3 cut(s)	19, 183, 223
NmeAIII	GCCGAG	2 cut(s)	5, 296
NmuCI	GTSAC	4 cut(s)	194, 227, 232, 391
NsiI	ATGCAT	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	674
PdmI	GAANNNNTTC	3 cut(s)	347, 437, 683
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	31, 104, 120
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	19, 183, 223
PspPI	GGNCC	2 cut(s)	116, 477
PsuI	RGATCY	3 cut(s)	17, 221, 715
PvuI	CGATCG	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	264, 548
SatI	GCNGC	3 cut(s)	30, 103, 119
Sau3AI	GATC	7 cut(s)	17, 90, 131, 221, 293, 462, 715
Sau96I	GGNCC	2 cut(s)	116, 477
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	7 cut(s)	9, 26, 100, 234, 252, 420, 686
SfaNI	GCATC	2 cut(s)	218, 551
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	659
SsiI	CCGC	6 cut(s)	29, 102, 105, 119, 143, 399
SspMI	CTAG	3 cut(s)	308, 539, 693
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	194, 409
TaiI	ACGT	2 cut(s)	9, 234
TaqI	TCGA	4 cut(s)	130, 155, 341, 362
TasI	AATT	1 cut(s)	659
TauI	GCSGC	3 cut(s)	32, 105, 121
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	264, 548
Tru9I	TTAA	2 cut(s)	264, 548
TscAI	CASTG	2 cut(s)	199, 241
TseFI	GTSAC	4 cut(s)	194, 227, 232, 391
Tsp45I	GTSAC	4 cut(s)	194, 227, 232, 391
TspDTI	ATGAA	4 cut(s)	567, 573, 579, 609
TspRI	CASTG	2 cut(s)	199, 241
VpaK11BI	GGWCC	1 cut(s)	477
XbaI	TCTAGA	1 cut(s)	307
XmnI	GAANNNNTTC	3 cut(s)	347, 437, 683
XspI	CTAG	3 cut(s)	308, 539, 693
ZraI	GACGTC	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.