RLG00000010922

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010172
Physical Location & Seq
Forward (+)
5436505 .. 5437366
862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010922

Sequence Viewer

Length: 741 bp
ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGGCGGCGGCGGCGGCGACGGCTTCATGTCTGTTTCTCAACCAAAGCGGCGTCGTAGGAGGGGGAAAGTCGGGGATCGGAGCTTGCGGCGGAGGCGGAGGAGGAGGGCCGCAGAAGGCTCGATCGGAGCAGGCGGACTCGTTTTCGAGCAGTTCTACGTCCTCCATCGGGGCTCCGGATGACAGTGACGGAGAAAATGCATCCAAGGAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGATTGACTTCTCTGGGATCAATGGGGTCTCTAGAAGATTCTCTTCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGCTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCATCATCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTGGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCAAGATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCTAGGAGTTGCTATTGCCTCTCAGATCTGCAAGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

25.9

Weight (kDa)

5.26

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 6 cut(s) 12, 25, 113, 237, 250, 316
AcoI YGGCCR 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 81, 252
AfiI CCNNNNNNNGG 4 cut(s) 198, 345, 489, 617
AgsI TTSAA 3 cut(s) 457, 688, 697
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 3 cut(s) 113, 433, 693
AluI AGCT 3 cut(s) 113, 433, 693
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 6 cut(s) 12, 25, 113, 237, 250, 316
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 4 cut(s) 137, 289, 555, 619
Asp700I GAANNNNTTC 3 cut(s) 362, 452, 692
AspS9I GGNCC 2 cut(s) 137, 492
AsuHPI GGTGA 2 cut(s) 260, 436
AvaII GGWCC 1 cut(s) 492
BamHI GGATCC 2 cut(s) 17, 242
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 612
BccI CCATC 3 cut(s) 203, 347, 619
BceAI ACGGC 2 cut(s) 66, 304
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 323, 702
BglII AGATCT 1 cut(s) 724
BisI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 45, 79, 118, 140
BlsI GCNGC 9 cut(s) 31, 34, 37, 40, 43, 46, 80, 119, 141
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 137, 492
BmiI GGNNCC 3 cut(s) 19, 204, 244
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 455
BsaHI GRCGYC 2 cut(s) 81, 252
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 24, 234
BsaWI WCCGGW 2 cut(s) 205, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 345, 489, 617
Bse1I ACTGG 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 24, 234
BseGI GGATG 2 cut(s) 214, 230
BseLI CCNNNNNNNGG 4 cut(s) 198, 345, 489, 617
BseMII CTCAG 2 cut(s) 381, 735
BseNI ACTGG 1 cut(s) 558
BseRI GAGGAG 4 cut(s) 144, 147, 281, 478
BseX3I CGGCCG 1 cut(s) 289
Bsh1285I CGRYCG 2 cut(s) 155, 292
BshFI GGCC 4 cut(s) 139, 291, 557, 621
BsiEI CGRYCG 2 cut(s) 155, 292
BsiSI CCGG 2 cut(s) 206, 246
BslI CCNNNNNNNGG 4 cut(s) 198, 345, 489, 617
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 4 cut(s) 139, 291, 557, 621
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
BspANI GGCC 4 cut(s) 139, 291, 557, 621
BspCNI CTCAG 2 cut(s) 380, 734
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 19, 204, 244
BspPI GGATC 6 cut(s) 12, 25, 113, 237, 250, 316
BspQI GCTCTTC 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 24, 234
BssMI GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
BssNI GRCGYC 2 cut(s) 81, 252
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 215, 424
Bst6I CTCTTC 3 cut(s) 339, 434, 683
BstACI GRCGYC 2 cut(s) 81, 252
BstC8I GCNNGC 2 cut(s) 115, 162
BstDEI CTNAG 2 cut(s) 367, 721
BstF5I GGATG 2 cut(s) 214, 230
BstKTI GATC 7 cut(s) 20, 108, 155, 245, 311, 480, 727
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
BstMCI CGRYCG 2 cut(s) 155, 292
BstMWI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 44, 50, 123
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 3 cut(s) 17, 242, 724
BstYI RGATCY 3 cut(s) 17, 242, 724
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 4 cut(s) 139, 291, 557, 621
BtsCI GGATG 2 cut(s) 214, 230
BtsIMutI CAGTG 2 cut(s) 220, 255
Cac8I GCNNGC 2 cut(s) 115, 162
Cfr13I GGNCC 2 cut(s) 137, 492
CseI GACGC 1 cut(s) 70
CviAII CATG 3 cut(s) 57, 544, 652
DdeI CTNAG 2 cut(s) 367, 721
DpnI GATC 7 cut(s) 19, 107, 154, 244, 310, 479, 726
DpnII GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 339, 434, 683
EarI CTCTTC 3 cut(s) 339, 434, 683
EciI GGCGGA 3 cut(s) 135, 141, 179
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 492
Eco52I CGGCCG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 3 cut(s) 60, 547, 655
FaiI YATR 3 cut(s) 58, 545, 653
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 3 cut(s) 56, 543, 651
Fnu4HI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 45, 79, 118, 140
FokI GGATG 2 cut(s) 217, 221
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 45, 79, 118, 140
FspBI CTAG 2 cut(s) 323, 702
GluI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 45, 79, 118, 140
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 4 cut(s) 139, 291, 557, 621
HapII CCGG 2 cut(s) 206, 246
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 81, 252
Hin1II CATG 3 cut(s) 60, 547, 655
HinfI GANTC 2 cut(s) 167, 329
HpaII CCGG 2 cut(s) 206, 246
HphI GGTGA 2 cut(s) 260, 436
Hpy188I TCNGA 7 cut(s) 110, 157, 276, 400, 634, 659, 724
Hpy188III TCNNGA 5 cut(s) 206, 323, 343, 369, 495
Hpy99I CGWCG 4 cut(s) 52, 86, 424, 508
HpyAV CCTTC 4 cut(s) 139, 233, 421, 462
HpyCH4III ACNGT 2 cut(s) 215, 424
HpyCH4IV ACGT 3 cut(s) 6, 188, 252
HpyCH4V TGCA 2 cut(s) 230, 730
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 44, 50, 123
HpyF3I CTNAG 2 cut(s) 367, 721
HpySE526I ACGT 3 cut(s) 6, 188, 252
Hsp92I GRCGYC 2 cut(s) 81, 252
Hsp92II CATG 3 cut(s) 60, 547, 655
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 4 cut(s) 110, 157, 208, 430
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 323, 702
MaeII ACGT 3 cut(s) 6, 188, 252
MaeIII GTNAC 4 cut(s) 215, 248, 253, 406
MalI GATC 7 cut(s) 19, 107, 154, 244, 310, 479, 726
MboI GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
MflI RGATCY 3 cut(s) 17, 242, 724
MhlI GDGCHC 1 cut(s) 205
MlyI GAGTC 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 232
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 3 cut(s) 362, 452, 692
MseI TTAA 2 cut(s) 285, 563
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 2 cut(s) 206, 246
MwoI GCNNNNNNNGC 6 cut(s) 35, 38, 41, 44, 50, 123
NdeII GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
NlaIII CATG 3 cut(s) 60, 547, 655
NlaIV GGNNCC 3 cut(s) 19, 204, 244
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 4 cut(s) 215, 248, 253, 406
NsiI ATGCAT 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 683
PdmI GAANNNNTTC 3 cut(s) 362, 452, 692
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 9 cut(s) 31, 34, 37, 40, 43, 46, 80, 119, 141
Ple19I CGATCG 1 cut(s) 155
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 19, 204, 244
PspPI GGNCC 2 cut(s) 137, 492
PsuI RGATCY 3 cut(s) 17, 242, 724
PvuI CGATCG 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 2 cut(s) 285, 563
SatI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 45, 79, 118, 140
Sau3AI GATC 7 cut(s) 17, 105, 152, 242, 308, 477, 724
Sau96I GGNCC 2 cut(s) 137, 492
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 205
SetI ASST 8 cut(s) 9, 26, 115, 191, 255, 273, 435, 695
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 422
SspMI CTAG 2 cut(s) 323, 702
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 215, 424
TaiI ACGT 3 cut(s) 9, 191, 255
TaqI TCGA 4 cut(s) 151, 176, 356, 377
TauI GCSGC 9 cut(s) 32, 35, 38, 41, 44, 47, 81, 120, 142
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 285, 563
Tru9I TTAA 2 cut(s) 285, 563
TscAI CASTG 2 cut(s) 220, 262
TseFI GTSAC 4 cut(s) 215, 248, 253, 406
Tsp45I GTSAC 4 cut(s) 215, 248, 253, 406
TspDTI ATGAA 4 cut(s) 45, 582, 588, 618
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 220, 262
VpaK11BI GGWCC 1 cut(s) 492
XbaI TCTAGA 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XmnI GAANNNNTTC 3 cut(s) 362, 452, 692
XspI CTAG 2 cut(s) 323, 702
ZraI GACGTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.