Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Forward (+)

28967253 .. 28967592

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGATGTCTTGGTGGGCCCCGCCTTCTTCATCGGGGATGGCCGCGGCCGTCTCTTCGTGAAGCAGAACGTGGAGGCGCTGCCGAGGTCCGAAGAGGCTTCCTCGGACAGCTCGTCCTTGATCGGGGCTCCCGACGACAGCGAAGAAGACGATTCCAAAGGAGATGATGGCGACGGCGACGAGGAGGAGGTGCAGAGCAAGTTTAACGGAGCTGGCCCCTGTTTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

7.99

Weight (kDa)

4.05

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	21, 43, 45
AcoI	YGGCCR	2 cut(s)	40, 46
AfiI	CCNNNNNNNGG	1 cut(s)	123
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	2 cut(s)	111, 212
AluI	AGCT	2 cut(s)	111, 212
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	4 cut(s)	16, 40, 46, 214
ApaI	GGGCCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	16, 17, 87, 215
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	20, 130
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	32, 161
BceAI	ACGGC	2 cut(s)	33, 190
BcoDI	GTCTC	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	43, 46, 80
BlsI	GCNGC	3 cut(s)	44, 47, 81
Bme18I	GGWCC	1 cut(s)	87
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	16, 17, 87, 215
BmiI	GGNNCC	4 cut(s)	18, 19, 129, 217
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BsaJI	CCNNGG	3 cut(s)	43, 83, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	43, 83, 102
BseGI	GGATG	2 cut(s)	10, 43
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	197, 200
BseSI	GKGCMC	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	4 cut(s)	18, 42, 48, 216
BsiEI	CGRYCG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsnI	GGCC	4 cut(s)	18, 42, 48, 216
Bsp120I	GGGCCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	20, 130
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	21, 43, 45
BspANI	GGCC	4 cut(s)	18, 42, 48, 216
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	18, 19, 129, 217
BssECI	CCNNGG	3 cut(s)	43, 83, 102
BssMI	GATC	1 cut(s)	120
Bst6I	CTCTTC	2 cut(s)	59, 87
BstC8I	GCNNGC	1 cut(s)	214
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	10, 43
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	120
BstMCI	CGRYCG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	18, 42, 48, 216
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	10, 43
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	16, 17, 87, 215
Cfr42I	CCGCGG	1 cut(s)	46
CviJI	RGCY	8 cut(s)	18, 42, 48, 98, 111, 128, 212, 216
CviKI_1	RGCY	8 cut(s)	18, 42, 48, 98, 111, 128, 212, 216
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	40, 46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	59, 87
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	59, 87
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	2 cut(s)	20, 130
Eco47I	GGWCC	1 cut(s)	87
Eco52I	CGGCCG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT38I	GRGCYC	2 cut(s)	20, 130
Esp3I	CGTCTC	1 cut(s)	56
FaiI	YATR	1 cut(s)	229
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	43, 46, 80
FokI	GGATG	2 cut(s)	17, 50
FriOI	GRGCYC	2 cut(s)	20, 130
Fsp4HI	GCNGC	3 cut(s)	43, 46, 80
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	43, 46, 80
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	18, 42, 48, 216
HhaI	GCGC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	91, 106
Hpy188III	TCNNGA	2 cut(s)	58, 131
Hpy99I	CGWCG	3 cut(s)	137, 176, 182
HpyAV	CCTTC	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	69
HspAI	GCGC	1 cut(s)	77
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	133, 209
LpnPI	CCDG	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	5 cut(s)	19, 46, 104, 155, 158
MhlI	GDGCHC	2 cut(s)	20, 130
MnlI	CCTC	7 cut(s)	67, 78, 88, 112, 175, 178, 181
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	45
NdeII	GATC	1 cut(s)	120
NlaIV	GGNNCC	4 cut(s)	18, 19, 129, 217
NmeAIII	GCCGAG	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 129
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	44, 47, 81
PspN4I	GGNNCC	4 cut(s)	18, 19, 129, 217
PspOMI	GGGCCC	1 cut(s)	16
PspPI	GGNCC	4 cut(s)	16, 17, 87, 215
SacII	CCGCGG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	43, 46, 80
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	4 cut(s)	16, 17, 87, 215
SduI	GDGCHC	2 cut(s)	20, 130
SetI	ASST	5 cut(s)	72, 89, 113, 192, 214
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	87
SsiI	CCGC	3 cut(s)	21, 43, 45
TaiI	ACGT	1 cut(s)	72
TauI	GCSGC	2 cut(s)	45, 48
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.