Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Reverse (-)

63497860 .. 63499629

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG448700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGAGGGAAGGCTCGATCGGAGCAGGCGGACTCGTTTTCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGATGACAGTGACGAAGAAAATGCATCCAAGGAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACCGCCGAGGAGGATTGACTTCTCTGGGATCAATGGGTTCTCTAGAAGATTCTCTTCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGGTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCGTCGTCATCATCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACATATGGTCAGAACCCCAAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCTAGGAGTTGCTATTGCCTCTCAGATCTGCAAGAGCATGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

25.87

Weight (kDa)

5.18

Isoelectric Point (pI)

71.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	6 cut(s)	29, 102, 105, 131, 256, 387
AclWI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
AcyI	GRCGYC	2 cut(s)	66, 219
AfiI	CCNNNNNNNGG	4 cut(s)	165, 318, 462, 599
AgsI	TTSAA	3 cut(s)	430, 670, 679
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	2 cut(s)	98, 675
AluI	AGCT	2 cut(s)	98, 675
AlwI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	1 cut(s)	601
Asp700I	GAANNNNTTC	3 cut(s)	335, 425, 674
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	227, 409
AvaII	GGWCC	1 cut(s)	465
BamHI	GGATCC	2 cut(s)	17, 209
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	594
BccI	CCATC	3 cut(s)	170, 320, 601
BceAI	ACGGC	2 cut(s)	51, 79
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BfaI	CTAG	3 cut(s)	296, 536, 684
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	2 cut(s)	30, 103
BlsI	GCNGC	2 cut(s)	31, 104
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	3 cut(s)	19, 171, 211
BmsI	GCATC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	594
BsaHI	GRCGYC	2 cut(s)	66, 219
BsaJI	CCNNGG	3 cut(s)	24, 201, 259
BsaWI	WCCGGW	2 cut(s)	172, 212
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 318, 462, 599
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	24, 201, 259
BseGI	GGATG	2 cut(s)	181, 197
BseLI	CCNNNNNNNGG	4 cut(s)	165, 318, 462, 599
BseMII	CTCAG	2 cut(s)	354, 717
BseRI	GAGGAG	3 cut(s)	248, 276, 451
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	603
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	173, 213
BslI	CCNNNNNNNGG	4 cut(s)	165, 318, 462, 599
BsnI	GGCC	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
BspACI	CCGC	6 cut(s)	29, 102, 105, 131, 256, 387
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	353, 716
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	19, 171, 211
BspPI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
BspQI	GCTCTTC	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	24, 201, 259
BssMI	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
BssNI	GRCGYC	2 cut(s)	66, 219
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	182, 397
Bst6I	CTCTTC	3 cut(s)	312, 407, 665
BstACI	GRCGYC	2 cut(s)	66, 219
BstC8I	GCNNGC	2 cut(s)	100, 129
BstDEI	CTNAG	2 cut(s)	340, 703
BstF5I	GGATG	2 cut(s)	181, 197
BstKTI	GATC	7 cut(s)	20, 93, 122, 212, 284, 453, 709
BstMBI	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	3 cut(s)	17, 209, 706
BstYI	RGATCY	3 cut(s)	17, 209, 706
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	181, 197
BtsIMutI	CAGTG	2 cut(s)	187, 222
Cac8I	GCNNGC	2 cut(s)	100, 129
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	526, 719
CviJI	RGCY	7 cut(s)	38, 98, 116, 170, 539, 603, 675
CviKI_1	RGCY	7 cut(s)	38, 98, 116, 170, 539, 603, 675
DdeI	CTNAG	2 cut(s)	340, 703
DpnI	GATC	7 cut(s)	19, 92, 121, 211, 283, 452, 708
DpnII	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
Eam1104I	CTCTTC	3 cut(s)	312, 407, 665
EarI	CTCTTC	3 cut(s)	312, 407, 665
EciI	GGCGGA	2 cut(s)	120, 146
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	529, 722
FaiI	YATR	4 cut(s)	527, 633, 635, 720
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	2 cut(s)	525, 718
FauNDI	CATATG	1 cut(s)	633
Fnu4HI	GCNGC	2 cut(s)	30, 103
FokI	GGATG	2 cut(s)	184, 188
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	30, 103
FspBI	CTAG	3 cut(s)	296, 536, 684
GluI	GCNGC	2 cut(s)	30, 103
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	2 cut(s)	173, 213
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	66, 219
Hin1II	CATG	2 cut(s)	529, 722
HinfI	GANTC	2 cut(s)	134, 302
HpaII	CCGG	2 cut(s)	173, 213
HphI	GGTGA	2 cut(s)	227, 409
Hpy188I	TCNGA	7 cut(s)	95, 124, 243, 373, 616, 641, 706
Hpy188III	TCNNGA	5 cut(s)	173, 296, 316, 342, 468
Hpy99I	CGWCG	7 cut(s)	37, 71, 397, 481, 484, 487, 490
HpyAV	CCTTC	4 cut(s)	106, 200, 394, 435
HpyCH4III	ACNGT	2 cut(s)	182, 397
HpyCH4IV	ACGT	2 cut(s)	6, 219
HpyCH4V	TGCA	2 cut(s)	197, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	340, 703
HpySE526I	ACGT	2 cut(s)	6, 219
Hsp92I	GRCGYC	2 cut(s)	66, 219
Hsp92II	CATG	2 cut(s)	529, 722
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	3 cut(s)	95, 124, 175
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	3 cut(s)	296, 536, 684
MaeII	ACGT	2 cut(s)	6, 219
MaeIII	GTNAC	4 cut(s)	182, 215, 220, 379
MalI	GATC	7 cut(s)	19, 92, 121, 211, 283, 452, 708
MboI	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
MflI	RGATCY	3 cut(s)	17, 209, 706
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	199
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	3 cut(s)	335, 425, 674
MseI	TTAA	2 cut(s)	252, 545
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	173, 213
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
NlaIII	CATG	2 cut(s)	529, 722
NlaIV	GGNNCC	3 cut(s)	19, 171, 211
NmeAIII	GCCGAG	2 cut(s)	5, 284
NmuCI	GTSAC	4 cut(s)	182, 215, 220, 379
NsiI	ATGCAT	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	2 cut(s)	482, 485
PdmI	GAANNNNTTC	3 cut(s)	335, 425, 674
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	31, 104
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	19, 171, 211
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	3 cut(s)	17, 209, 706
PvuI	CGATCG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	2 cut(s)	252, 545
SatI	GCNGC	2 cut(s)	30, 103
Sau3AI	GATC	7 cut(s)	17, 90, 119, 209, 281, 450, 706
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	9, 26, 100, 222, 240, 408, 677
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	650
SsiI	CCGC	6 cut(s)	29, 102, 105, 131, 256, 387
SspMI	CTAG	3 cut(s)	296, 536, 684
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	182, 397
TaiI	ACGT	2 cut(s)	9, 222
TaqI	TCGA	4 cut(s)	118, 143, 329, 350
TasI	AATT	1 cut(s)	650
TauI	GCSGC	2 cut(s)	32, 105
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	252, 545
Tru9I	TTAA	2 cut(s)	252, 545
TscAI	CASTG	2 cut(s)	187, 229
TseFI	GTSAC	4 cut(s)	182, 215, 220, 379
Tsp45I	GTSAC	4 cut(s)	182, 215, 220, 379
TspDTI	ATGAA	3 cut(s)	564, 570, 600
TspRI	CASTG	2 cut(s)	187, 229
VpaK11BI	GGWCC	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	295
XmnI	GAANNNNTTC	3 cut(s)	335, 425, 674
XspI	CTAG	3 cut(s)	296, 536, 684
ZraI	GACGTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.