Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Reverse (-)

26812651 .. 26814252

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36700.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGACGTTCTGGTGGGATCCACCTCCGCCGCGACGGCCTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTGGGCGGCGGAGGTCTCAACCAAAACGGAGGAGGATCGGCGATCGGGGCATGCGGACAGCGCAACCAGGCTCGGTCGGAGCGGGAAGACTCGTTCTCGAGCAGTTCGTCGTCGTCCATAGGGGCACCTGACGACAGTGACGAAGAAAATGAATCCAAGGAAGGATCCGGTGACGTCACTGACAGCGAAGAGGTTCAGAGCAAGTTTAACGGCCGCGCCGCTGGAGGATTGACTTCTCTGGGATCGATGGATTCTCTGGAAGATTCTCTCCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGGAAATCGAAATCATTTGCAAGCTTATCGGATGTTGTGACGACCGCTTCGACGGTGAAGGAGCTGGAGAAGAGGGACAACCCATTCAACAAGAGGAGAAGAGTTTTGATCGCCTCGAAATGGTCCAGAAAGTCGTCGTTTTCATCTTTCTACAACCACCCAAACCCAAAGTCCATGCCATTACTAGCATCCTTAAATGAAGACGAAGAAGAAGAACCAGAAGAGACGCAAGAAGACCCATCATCAGGGCAATCTTCCTCAGATGAGAAAGAGCCACGCATGATCAGGACCCCTAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCTAGGAGTTGCTATTGCCTCTCAGATCTGCAAGAACATGAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.68

Weight (kDa)

4.96

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	2 cut(s)	32, 285
AciI	CCGC	9 cut(s)	27, 30, 75, 78, 123, 151, 283, 288, 417
AclWI	GGATC	6 cut(s)	12, 25, 112, 228, 241, 319
AcoI	YGGCCR	1 cut(s)	280
AcyI	GRCGYC	2 cut(s)	66, 243
AfiI	CCNNNNNNNGG	3 cut(s)	348, 492, 617
AgsI	TTSAA	3 cut(s)	460, 688, 697
AjnI	CCWGG	1 cut(s)	135
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	396, 436, 693
AluI	AGCT	3 cut(s)	396, 436, 693
Alw26I	GTCTC	2 cut(s)	89, 590
AlwI	GGATC	6 cut(s)	12, 25, 112, 228, 241, 319
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	36, 280
ArsI	GACNNNNNNTTYG	4 cut(s)	403, 435, 527, 559
Asp700I	GAANNNNTTC	3 cut(s)	261, 365, 692
AspLEI	GCGC	2 cut(s)	132, 287
AspS9I	GGNCC	2 cut(s)	495, 660
AsuHPI	GGTGA	2 cut(s)	251, 439
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	495, 660
BaeGI	GKGCMC	1 cut(s)	196
BamHI	GGATCC	2 cut(s)	17, 233
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	3 cut(s)	162, 579, 612
BccI	CCATC	3 cut(s)	310, 350, 619
BceAI	ACGGC	3 cut(s)	51, 79, 295
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	89, 590
BfaI	CTAG	2 cut(s)	557, 702
BglI	GCCNNNNNGGC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	4 cut(s)	30, 76, 283, 288
BlsI	GCNGC	4 cut(s)	31, 77, 284, 289
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	495, 660
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	495, 660
BmiI	GGNNCC	4 cut(s)	19, 195, 235, 662
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	3 cut(s)	162, 579, 612
BpmI	CTGGAG	2 cut(s)	312, 458
Bsa29I	ATCGAT	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	66, 243
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 492, 617
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	409, 560
BseLI	CCNNNNNNNGG	3 cut(s)	348, 492, 617
BseMII	CTCAG	3 cut(s)	384, 645, 735
BseRI	GAGGAG	2 cut(s)	114, 481
BseSI	GKGCMC	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	280
Bsh1236I	CGCG	2 cut(s)	32, 285
Bsh1285I	CGRYCG	4 cut(s)	114, 146, 283, 417
BshFI	GGCC	2 cut(s)	38, 282
BshNI	GGYRCC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	4 cut(s)	114, 146, 283, 417
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	348, 492, 617
BsmAI	GTCTC	2 cut(s)	89, 590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	38, 282
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
BspACI	CCGC	9 cut(s)	27, 30, 75, 78, 123, 151, 283, 288, 417
BspANI	GGCC	2 cut(s)	38, 282
BspCNI	CTCAG	3 cut(s)	383, 644, 734
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	2 cut(s)	32, 285
BspLI	GGNNCC	4 cut(s)	19, 195, 235, 662
BspPI	GGATC	6 cut(s)	12, 25, 112, 228, 241, 319
BspQI	GCTCTTC	1 cut(s)	683
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
BssNI	GRCGYC	2 cut(s)	66, 243
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	206, 427
Bst6I	CTCTTC	5 cut(s)	252, 437, 466, 588, 683
BstACI	GRCGYC	2 cut(s)	66, 243
BstC8I	GCNNGC	2 cut(s)	121, 394
BstDEI	CTNAG	3 cut(s)	370, 631, 721
BstF5I	GGATG	2 cut(s)	409, 560
BstFNI	CGCG	2 cut(s)	32, 285
BstHHI	GCGC	2 cut(s)	132, 287
BstKTI	GATC	8 cut(s)	20, 107, 114, 236, 314, 483, 657, 727
BstMAI	GTCTC	2 cut(s)	89, 590
BstMBI	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
BstMCI	CGRYCG	4 cut(s)	114, 146, 283, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 72, 116, 129
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	2 cut(s)	32, 285
BstV2I	GAAGAC	3 cut(s)	162, 579, 612
BstX2I	RGATCY	3 cut(s)	17, 233, 724
BstYI	RGATCY	3 cut(s)	17, 233, 724
BstZI	CGGCCG	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	38, 282
BsuTUI	ATCGAT	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	409, 560
BtsIMutI	CAGTG	2 cut(s)	211, 246
Cac8I	GCNNGC	2 cut(s)	121, 394
CfoI	GCGC	2 cut(s)	132, 287
Cfr13I	GGNCC	2 cut(s)	495, 660
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	2 cut(s)	55, 607
CviAII	CATG	4 cut(s)	120, 547, 652, 737
CviJI	RGCY	7 cut(s)	38, 140, 282, 396, 436, 646, 693
CviKI_1	RGCY	7 cut(s)	38, 140, 282, 396, 436, 646, 693
DdeI	CTNAG	3 cut(s)	370, 631, 721
DpnI	GATC	8 cut(s)	19, 106, 113, 235, 313, 482, 656, 726
DpnII	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
EaeI	YGGCCR	1 cut(s)	280
EagI	CGGCCG	1 cut(s)	280
Eam1104I	CTCTTC	5 cut(s)	252, 437, 466, 588, 683
EarI	CTCTTC	5 cut(s)	252, 437, 466, 588, 683
EciI	GGCGGA	2 cut(s)	16, 93
EclXI	CGGCCG	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	495, 660
Eco52I	CGGCCG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	4 cut(s)	123, 550, 655, 740
FaiI	YATR	5 cut(s)	121, 188, 548, 653, 738
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	119, 546, 651, 736
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	30, 76, 283, 288
FokI	GGATG	2 cut(s)	416, 547
Fsp4HI	GCNGC	4 cut(s)	30, 76, 283, 288
FspBI	CTAG	2 cut(s)	557, 702
GlaI	GCGC	2 cut(s)	131, 286
GluI	GCNGC	4 cut(s)	30, 76, 283, 288
GsuI	CTGGAG	2 cut(s)	312, 458
HaeIII	GGCC	2 cut(s)	38, 282
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	55, 607
HhaI	GCGC	2 cut(s)	132, 287
Hin1I	GRCGYC	2 cut(s)	66, 243
Hin1II	CATG	4 cut(s)	123, 550, 655, 740
Hin6I	GCGC	2 cut(s)	130, 285
HinP1I	GCGC	2 cut(s)	130, 285
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	4 cut(s)	158, 221, 320, 332
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	251, 439
Hpy188I	TCNGA	5 cut(s)	148, 267, 403, 634, 724
Hpy188III	TCNNGA	5 cut(s)	166, 326, 346, 498, 658
Hpy99I	CGWCG	6 cut(s)	37, 71, 181, 184, 427, 511
HpyAV	CCTTC	2 cut(s)	224, 424
HpyCH4III	ACNGT	2 cut(s)	206, 427
HpyCH4IV	ACGT	2 cut(s)	6, 243
HpyCH4V	TGCA	2 cut(s)	392, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 72, 116, 129
HpyF3I	CTNAG	3 cut(s)	370, 631, 721
HpySE526I	ACGT	2 cut(s)	6, 243
Hsp92I	GRCGYC	2 cut(s)	66, 243
Hsp92II	CATG	4 cut(s)	123, 550, 655, 740
HspAI	GCGC	2 cut(s)	130, 285
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
LguI	GCTCTTC	1 cut(s)	683
LmnI	GCTCC	2 cut(s)	148, 433
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	2 cut(s)	557, 702
MaeII	ACGT	2 cut(s)	6, 243
MaeIII	GTNAC	4 cut(s)	206, 239, 244, 409
MalI	GATC	8 cut(s)	19, 106, 113, 235, 313, 482, 656, 726
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
MflI	RGATCY	3 cut(s)	17, 233, 724
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	126
MroXI	GAANNNNTTC	3 cut(s)	261, 365, 692
MseI	TTAA	2 cut(s)	276, 566
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	2 cut(s)	32, 285
MwoI	GCNNNNNNNGC	4 cut(s)	35, 72, 116, 129
NdeII	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
NlaIII	CATG	4 cut(s)	123, 550, 655, 740
NlaIV	GGNNCC	4 cut(s)	19, 195, 235, 662
NmuCI	GTSAC	4 cut(s)	206, 239, 244, 409
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	3 cut(s)	173, 207, 419
PdmI	GAANNNNTTC	3 cut(s)	261, 365, 692
PfeI	GAWTC	3 cut(s)	221, 320, 332
PkrI	GCNGC	4 cut(s)	31, 77, 284, 289
Ple19I	CGATCG	1 cut(s)	114
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	4 cut(s)	19, 195, 235, 662
PspPI	GGNCC	2 cut(s)	495, 660
PspPPI	RGGWCCY	1 cut(s)	660
PsuI	RGATCY	3 cut(s)	17, 233, 724
PvuI	CGATCG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	276, 566
SatI	GCNGC	4 cut(s)	30, 76, 283, 288
Sau3AI	GATC	8 cut(s)	17, 104, 111, 233, 311, 480, 654, 724
Sau96I	GGNCC	2 cut(s)	495, 660
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	9, 26, 85, 199, 246, 264, 398, 438, 695
SfaNI	GCATC	1 cut(s)	569
Sfr274I	CTCGAG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	495, 660
SlaI	CTCGAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	1 cut(s)	668
SsiI	CCGC	9 cut(s)	27, 30, 75, 78, 123, 151, 283, 288, 417
SspMI	CTAG	2 cut(s)	557, 702
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	206, 427
TaiI	ACGT	2 cut(s)	9, 246
TaqI	TCGA	6 cut(s)	167, 314, 359, 380, 422, 488
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	668
TauI	GCSGC	4 cut(s)	32, 78, 285, 290
TfiI	GAWTC	3 cut(s)	221, 320, 332
Tru1I	TTAA	2 cut(s)	276, 566
Tru9I	TTAA	2 cut(s)	276, 566
TscAI	CASTG	2 cut(s)	211, 253
TseFI	GTSAC	4 cut(s)	206, 239, 244, 409
Tsp45I	GTSAC	4 cut(s)	206, 239, 244, 409
TspDTI	ATGAA	3 cut(s)	234, 504, 585
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	211, 253
VpaK11BI	GGWCC	2 cut(s)	495, 660
XceI	RCATGY	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	166
XmnI	GAANNNNTTC	3 cut(s)	261, 365, 692
XspI	CTAG	2 cut(s)	557, 702
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.