Rh6CG462400

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010172
Physical Location & Seq
Reverse (-)
63564779 .. 63567132
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG462400.1

Sequence Viewer

Length: 738 bp
ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTAGGAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGAGGAGGAGGAGGGCCGCAGAAGGCTCGATCGGAGCAGGCGGAGTCGTTTTCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGATGACAGTGACGAAGAAAATGCATCCAAGCAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGCAGAGGAGGATTGACTTCTCTGGGATCAATGGGTTCTCTAGAAGATTCTCTTCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGGTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCAAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCCAGGAGTTGCTATTGTCTCTCAGATCTGCAAGAACATGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

26.05

Weight (kDa)

5.29

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 7 cut(s) 29, 105, 108, 125, 149, 277, 408
AclWI GGATC 6 cut(s) 12, 25, 101, 222, 235, 310
AcoI YGGCCR 1 cut(s) 274
AcyI GRCGYC 2 cut(s) 66, 237
AfiI CCNNNNNNNGG 4 cut(s) 183, 339, 483, 608
AgsI TTSAA 3 cut(s) 451, 679, 688
AjnI CCWGG 1 cut(s) 692
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 2 cut(s) 101, 684
AluI AGCT 2 cut(s) 101, 684
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 6 cut(s) 12, 25, 101, 222, 235, 310
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 3 cut(s) 122, 274, 610
Asp700I GAANNNNTTC 3 cut(s) 356, 446, 683
AspS9I GGNCC 2 cut(s) 122, 486
AsuHPI GGTGA 2 cut(s) 245, 430
AvaII GGWCC 1 cut(s) 486
BamHI GGATCC 2 cut(s) 17, 227
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 603
BccI CCATC 3 cut(s) 188, 341, 610
BceAI ACGGC 3 cut(s) 51, 79, 289
BcgI CGANNNNNNTGC 4 cut(s) 116, 150, 194, 228
BciT130I CCWGG 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 2 cut(s) 317, 545
BglII AGATCT 1 cut(s) 715
BisI GCNGC 4 cut(s) 30, 106, 125, 277
BlsI GCNGC 4 cut(s) 31, 107, 126, 278
Bme1390I CCNGG 1 cut(s) 694
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 2 cut(s) 122, 486
BmiI GGNNCC 3 cut(s) 19, 189, 229
BmrFI CCNGG 1 cut(s) 694
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 603
BsaHI GRCGYC 2 cut(s) 66, 237
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 2 cut(s) 190, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 339, 483, 608
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 694
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 199, 215
BseLI CCNNNNNNNGG 4 cut(s) 183, 339, 483, 608
BseMII CTCAG 2 cut(s) 375, 726
BseRI GAGGAG 7 cut(s) 90, 126, 129, 132, 266, 297, 472
BseX3I CGGCCG 1 cut(s) 274
Bsh1285I CGRYCG 2 cut(s) 140, 277
BshFI GGCC 3 cut(s) 124, 276, 612
BsiEI CGRYCG 2 cut(s) 140, 277
BsiSI CCGG 2 cut(s) 191, 231
BslI CCNNNNNNNGG 4 cut(s) 183, 339, 483, 608
BsmAI GTCTC 1 cut(s) 713
BsnI GGCC 3 cut(s) 124, 276, 612
Bsp1286I GDGCHC 1 cut(s) 190
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
BspACI CCGC 7 cut(s) 29, 105, 108, 125, 149, 277, 408
BspANI GGCC 3 cut(s) 124, 276, 612
BspCNI CTCAG 2 cut(s) 374, 725
BspEI TCCGGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 19, 189, 229
BspPI GGATC 6 cut(s) 12, 25, 101, 222, 235, 310
BspQI GCTCTTC 1 cut(s) 674
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
BssNI GRCGYC 2 cut(s) 66, 237
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 2 cut(s) 200, 418
Bst6I CTCTTC 3 cut(s) 333, 428, 674
BstACI GRCGYC 2 cut(s) 66, 237
BstC8I GCNNGC 2 cut(s) 103, 147
BstDEI CTNAG 2 cut(s) 361, 712
BstF5I GGATG 2 cut(s) 199, 215
BstKTI GATC 7 cut(s) 20, 96, 140, 230, 305, 474, 718
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
BstMCI CGRYCG 2 cut(s) 140, 277
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 3 cut(s) 17, 227, 715
BstYI RGATCY 3 cut(s) 17, 227, 715
BstZI CGGCCG 1 cut(s) 274
BsuRI GGCC 3 cut(s) 124, 276, 612
BtsCI GGATG 2 cut(s) 199, 215
BtsIMutI CAGTG 2 cut(s) 205, 240
Cac8I GCNNGC 2 cut(s) 103, 147
Cfr13I GGNCC 2 cut(s) 122, 486
CseI GACGC 1 cut(s) 55
CviAII CATG 3 cut(s) 535, 643, 728
CviJI RGCY 9 cut(s) 38, 101, 124, 134, 188, 276, 548, 612, 684
CviKI_1 RGCY 9 cut(s) 38, 101, 124, 134, 188, 276, 548, 612, 684
DdeI CTNAG 2 cut(s) 361, 712
DpnI GATC 7 cut(s) 19, 95, 139, 229, 304, 473, 717
DpnII GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
EaeI YGGCCR 1 cut(s) 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 333, 428, 674
EarI CTCTTC 3 cut(s) 333, 428, 674
EciI GGCGGA 2 cut(s) 123, 164
EclXI CGGCCG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 486
Eco52I CGGCCG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 692
EcoT22I ATGCAT 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 3 cut(s) 538, 646, 731
FaiI YATR 3 cut(s) 536, 644, 729
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 3 cut(s) 534, 642, 727
Fnu4HI GCNGC 4 cut(s) 30, 106, 125, 277
FokI GGATG 2 cut(s) 202, 206
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 4 cut(s) 30, 106, 125, 277
FspBI CTAG 2 cut(s) 317, 545
GluI GCNGC 4 cut(s) 30, 106, 125, 277
HaeIII GGCC 3 cut(s) 124, 276, 612
HapII CCGG 2 cut(s) 191, 231
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 2 cut(s) 66, 237
Hin1II CATG 3 cut(s) 538, 646, 731
HinfI GANTC 2 cut(s) 152, 323
HpaII CCGG 2 cut(s) 191, 231
HphI GGTGA 2 cut(s) 245, 430
Hpy188I TCNGA 7 cut(s) 98, 142, 261, 394, 625, 650, 715
Hpy188III TCNNGA 5 cut(s) 191, 317, 337, 363, 489
Hpy99I CGWCG 5 cut(s) 37, 71, 418, 502, 505
HpyAV CCTTC 3 cut(s) 124, 415, 456
HpyCH4III ACNGT 2 cut(s) 200, 418
HpyCH4IV ACGT 2 cut(s) 6, 237
HpyCH4V TGCA 2 cut(s) 215, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 361, 712
HpySE526I ACGT 2 cut(s) 6, 237
Hsp92I GRCGYC 2 cut(s) 66, 237
Hsp92II CATG 3 cut(s) 538, 646, 731
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
LguI GCTCTTC 1 cut(s) 674
LmnI GCTCC 3 cut(s) 98, 142, 193
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 317, 545
MaeII ACGT 2 cut(s) 6, 237
MaeIII GTNAC 4 cut(s) 200, 233, 238, 400
MalI GATC 7 cut(s) 19, 95, 139, 229, 304, 473, 717
MboI GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
MflI RGATCY 3 cut(s) 17, 227, 715
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 1 cut(s) 659
MlyI GAGTC 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 217
MroI TCCGGA 1 cut(s) 190
MroXI GAANNNNTTC 3 cut(s) 356, 446, 683
MseI TTAA 2 cut(s) 270, 554
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 191, 231
MspR9I CCNGG 1 cut(s) 694
MvaI CCWGG 1 cut(s) 694
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
NlaIII CATG 3 cut(s) 538, 646, 731
NlaIV GGNNCC 3 cut(s) 19, 189, 229
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 4 cut(s) 200, 233, 238, 400
NsiI ATGCAT 1 cut(s) 217
OliI CACNNNNGTG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 674
PdmI GAANNNNTTC 3 cut(s) 356, 446, 683
PfeI GAWTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 4 cut(s) 31, 107, 126, 278
Ple19I CGATCG 1 cut(s) 140
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 692
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 19, 189, 229
PspPI GGNCC 2 cut(s) 122, 486
PsuI RGATCY 3 cut(s) 17, 227, 715
PvuI CGATCG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 674
SaqAI TTAA 2 cut(s) 270, 554
SatI GCNGC 4 cut(s) 30, 106, 125, 277
Sau3AI GATC 7 cut(s) 17, 93, 137, 227, 302, 471, 715
Sau96I GGNCC 2 cut(s) 122, 486
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 694
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 9, 26, 103, 240, 258, 429, 686
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 1 cut(s) 659
SsiI CCGC 7 cut(s) 29, 105, 108, 125, 149, 277, 408
SspMI CTAG 2 cut(s) 317, 545
StyD4I CCNGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 200, 418
TaiI ACGT 2 cut(s) 9, 240
TaqI TCGA 4 cut(s) 136, 161, 350, 371
TasI AATT 1 cut(s) 659
TauI GCSGC 4 cut(s) 32, 108, 127, 279
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 270, 554
Tru9I TTAA 2 cut(s) 270, 554
TscAI CASTG 2 cut(s) 205, 247
TseFI GTSAC 4 cut(s) 200, 233, 238, 400
Tsp45I GTSAC 4 cut(s) 200, 233, 238, 400
TspDTI ATGAA 3 cut(s) 573, 579, 609
TspRI CASTG 2 cut(s) 205, 247
VpaK11BI GGWCC 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 316
XmnI GAANNNNTTC 3 cut(s) 356, 446, 683
XspI CTAG 2 cut(s) 317, 545
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.