Rmu_sc0023906.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023906.1
OG0010172
Physical Location & Seq
Forward (+)
857 .. 1722
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023906.1_g000001.1.cds

Sequence Viewer

Length: 723 bp
atggacgttttggtgggatccacctcggcggcgacggcttcctgtctgtttctcaaccaaaacggcgtcgtaggagggggaaaatcggggatcggagcttgcggcggagggaaggctcgatcggagcaggcggactcgttttcgagcagttcttcgtcctccatcggggctccggatgacagtgacgaagaaaatgcatccaaggaaggatccggtgacgtcactgacagcgaggaggttcagagcaagtttaacggccgaggaggattgacttctctgggatcaatgggctctctagaagattctcttcccatcaagaggggattatcgaactacttctcaggaaaatcgaaatcgtttgcgagtttatcagatgttgtgaccaccgccacgacggtgaaggaggtggagaagagggagaacccattcaacaagaggagaagggttttaatcgcctcaaagtggtccagaaagtcgtcgtcgtcgtcgtctttttacaaccacccaaacccaaaatccatgccattattagcctccttaaatgaagatgaagaagaacaagaaccagaagaaacacaagaagacccatcatcaggccaatcttcatcagatgagaaagaaccacacatggtcagaaccccaaaattgcttgacaggggattgaagagcttcaagtctaggagttgctattgcctctcagatctgcaagaacatgaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.6

Weight (kDa)

5.08

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 5 cut(s) 29, 102, 105, 131, 387
AclWI GGATC 6 cut(s) 12, 25, 98, 204, 217, 289
AcoI YGGCCR 1 cut(s) 256
AcyI GRCGYC 2 cut(s) 66, 219
AfiI CCNNNNNNNGG 4 cut(s) 165, 318, 462, 593
AgsI TTSAA 3 cut(s) 430, 664, 673
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 2 cut(s) 98, 669
AluI AGCT 2 cut(s) 98, 669
AlwI GGATC 6 cut(s) 12, 25, 98, 204, 217, 289
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 256, 595
Asp700I GAANNNNTTC 3 cut(s) 335, 425, 668
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 227, 409
AvaII GGWCC 1 cut(s) 465
BamHI GGATCC 2 cut(s) 17, 209
BanII GRGCYC 2 cut(s) 172, 293
BbsI GAAGAC 1 cut(s) 588
BccI CCATC 3 cut(s) 170, 320, 595
BceAI ACGGC 3 cut(s) 51, 79, 271
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BfaI CTAG 2 cut(s) 296, 678
BglII AGATCT 1 cut(s) 700
BisI GCNGC 2 cut(s) 30, 103
BlsI GCNGC 2 cut(s) 31, 104
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 3 cut(s) 19, 171, 211
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 588
BsaHI GRCGYC 2 cut(s) 66, 219
BsaJI CCNNGG 3 cut(s) 24, 201, 259
BsaWI WCCGGW 2 cut(s) 172, 212
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 318, 462, 593
BseAI TCCGGA 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 24, 201, 259
BseGI GGATG 2 cut(s) 181, 197
BseLI CCNNNNNNNGG 4 cut(s) 165, 318, 462, 593
BseMII CTCAG 2 cut(s) 354, 711
BseRI GAGGAG 3 cut(s) 248, 276, 451
BseX3I CGGCCG 1 cut(s) 256
Bsh1285I CGRYCG 2 cut(s) 122, 259
BshFI GGCC 2 cut(s) 258, 597
BsiEI CGRYCG 2 cut(s) 122, 259
BsiSI CCGG 2 cut(s) 173, 213
BslI CCNNNNNNNGG 4 cut(s) 165, 318, 462, 593
BsnI GGCC 2 cut(s) 258, 597
Bsp1286I GDGCHC 2 cut(s) 172, 293
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 6 cut(s) 17, 90, 119, 209, 281, 700
BspACI CCGC 5 cut(s) 29, 102, 105, 131, 387
BspANI GGCC 2 cut(s) 258, 597
BspCNI CTCAG 2 cut(s) 353, 710
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 19, 171, 211
BspPI GGATC 6 cut(s) 12, 25, 98, 204, 217, 289
BspQI GCTCTTC 1 cut(s) 659
BssECI CCNNGG 3 cut(s) 24, 201, 259
BssMI GATC 6 cut(s) 17, 90, 119, 209, 281, 700
BssNI GRCGYC 2 cut(s) 66, 219
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 182, 397
Bst6I CTCTTC 3 cut(s) 312, 407, 659
BstACI GRCGYC 2 cut(s) 66, 219
BstC8I GCNNGC 2 cut(s) 100, 129
BstDEI CTNAG 2 cut(s) 340, 697
BstF5I GGATG 2 cut(s) 181, 197
BstKTI GATC 6 cut(s) 20, 93, 122, 212, 284, 703
BstMBI GATC 6 cut(s) 17, 90, 119, 209, 281, 700
BstMCI CGRYCG 2 cut(s) 122, 259
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 3 cut(s) 17, 209, 700
BstYI RGATCY 3 cut(s) 17, 209, 700
BstZI CGGCCG 1 cut(s) 256
BsuRI GGCC 2 cut(s) 258, 597
BtsCI GGATG 2 cut(s) 181, 197
BtsIMutI CAGTG 2 cut(s) 187, 222
Cac8I GCNNGC 2 cut(s) 100, 129
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 1 cut(s) 55
CviAII CATG 3 cut(s) 520, 628, 713
CviJI RGCY 9 cut(s) 38, 98, 116, 170, 258, 291, 533, 597, 669
CviKI_1 RGCY 9 cut(s) 38, 98, 116, 170, 258, 291, 533, 597, 669
DdeI CTNAG 2 cut(s) 340, 697
DpnI GATC 6 cut(s) 19, 92, 121, 211, 283, 702
DpnII GATC 6 cut(s) 17, 90, 119, 209, 281, 700
EaeI YGGCCR 1 cut(s) 256
EagI CGGCCG 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 312, 407, 659
EarI CTCTTC 3 cut(s) 312, 407, 659
EciI GGCGGA 2 cut(s) 120, 146
EclXI CGGCCG 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 172, 293
Eco47I GGWCC 1 cut(s) 465
Eco52I CGGCCG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 172, 293
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 523, 631, 716
FaiI YATR 3 cut(s) 521, 629, 714
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 519, 627, 712
Fnu4HI GCNGC 2 cut(s) 30, 103
FokI GGATG 2 cut(s) 184, 188
FriOI GRGCYC 2 cut(s) 172, 293
Fsp4HI GCNGC 2 cut(s) 30, 103
FspBI CTAG 2 cut(s) 296, 678
GluI GCNGC 2 cut(s) 30, 103
HaeIII GGCC 2 cut(s) 258, 597
HapII CCGG 2 cut(s) 173, 213
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 2 cut(s) 66, 219
Hin1II CATG 3 cut(s) 523, 631, 716
HinfI GANTC 2 cut(s) 134, 302
HpaII CCGG 2 cut(s) 173, 213
HphI GGTGA 2 cut(s) 227, 409
Hpy188I TCNGA 7 cut(s) 95, 124, 243, 373, 610, 635, 700
Hpy188III TCNNGA 5 cut(s) 173, 296, 316, 342, 468
Hpy99I CGWCG 7 cut(s) 37, 71, 397, 481, 484, 487, 490
HpyAV CCTTC 4 cut(s) 106, 200, 394, 435
HpyCH4III ACNGT 2 cut(s) 182, 397
HpyCH4IV ACGT 2 cut(s) 6, 219
HpyCH4V TGCA 2 cut(s) 197, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 340, 697
HpySE526I ACGT 2 cut(s) 6, 219
Hsp92I GRCGYC 2 cut(s) 66, 219
Hsp92II CATG 3 cut(s) 523, 631, 716
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 6 cut(s) 17, 90, 119, 209, 281, 700
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 3 cut(s) 95, 124, 175
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 296, 678
MaeII ACGT 2 cut(s) 6, 219
MaeIII GTNAC 4 cut(s) 182, 215, 220, 379
MalI GATC 6 cut(s) 19, 92, 121, 211, 283, 702
MboI GATC 6 cut(s) 17, 90, 119, 209, 281, 700
MflI RGATCY 3 cut(s) 17, 209, 700
MhlI GDGCHC 2 cut(s) 172, 293
MluCI AATT 1 cut(s) 644
MlyI GAGTC 1 cut(s) 128
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 3 cut(s) 335, 425, 668
MseI TTAA 3 cut(s) 252, 449, 539
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 173, 213
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 6 cut(s) 17, 90, 119, 209, 281, 700
NlaIII CATG 3 cut(s) 523, 631, 716
NlaIV GGNNCC 3 cut(s) 19, 171, 211
NmeAIII GCCGAG 2 cut(s) 5, 284
NmuCI GTSAC 4 cut(s) 182, 215, 220, 379
NsiI ATGCAT 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 659
PcsI WCGNNNNNNNCGW 2 cut(s) 482, 485
PdmI GAANNNNTTC 3 cut(s) 335, 425, 668
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 2 cut(s) 31, 104
Ple19I CGATCG 1 cut(s) 122
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 19, 171, 211
PspPI GGNCC 1 cut(s) 465
PsuI RGATCY 3 cut(s) 17, 209, 700
PvuI CGATCG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 252, 449, 539
SatI GCNGC 2 cut(s) 30, 103
Sau3AI GATC 6 cut(s) 17, 90, 119, 209, 281, 700
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 2 cut(s) 172, 293
SetI ASST 7 cut(s) 9, 26, 100, 222, 240, 408, 671
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 1 cut(s) 644
SsiI CCGC 5 cut(s) 29, 102, 105, 131, 387
SspMI CTAG 2 cut(s) 296, 678
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 182, 397
TaiI ACGT 2 cut(s) 9, 222
TaqI TCGA 4 cut(s) 118, 143, 329, 350
TasI AATT 1 cut(s) 644
TauI GCSGC 2 cut(s) 32, 105
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 252, 449, 539
Tru9I TTAA 3 cut(s) 252, 449, 539
TscAI CASTG 2 cut(s) 187, 229
TseFI GTSAC 4 cut(s) 182, 215, 220, 379
Tsp45I GTSAC 4 cut(s) 182, 215, 220, 379
TspDTI ATGAA 3 cut(s) 558, 564, 594
TspRI CASTG 2 cut(s) 187, 229
VpaK11BI GGWCC 1 cut(s) 465
XbaI TCTAGA 1 cut(s) 295
XmnI GAANNNNTTC 3 cut(s) 335, 425, 668
XspI CTAG 2 cut(s) 296, 678
ZraI GACGTC 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.