pycom15g09790

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010172
Physical Location & Seq
Forward (+)
6382848 .. 6383685
838 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09790.2

Sequence Viewer

Length: 729 bp
ATGGACGTCCTAGTGGGCCCCACCTTCTCCATCGACGTGTCGTCCTACGGCCCCGCGCCGACGCAGGACAACCGCAACCGCGGCGGTCTGTACCTGAATCAGGACCGCGGCGCCGCGGTGGCGGAGGAGGCGTCGTCGGACAGCTCGTCATCTATCGGTGTTCCGGATGACAGCGAGGAAGAGGAAGACTCCAAAGGCGATAACGGCGATGAGGTGCAGAGCAAGTTTAACGGCGGCGGAGGAGGAGGGTTGGGTTCTCTGGGTTCATTTGGATCACTCGAAGATTCTCTCCCAATCAAGAGGGGATTATCCAACTATTTTTCAGGAAAATCAAAGTCATTTGCCAGCCTGTCAGAAGTGAGCAGCACTGTGAGTTCAGTGAAGGAGGTGGAGAAGCAGGACAACCCATTCAACAAGCGGCGGCGGGTTCTGATCGCCTCCAAGTGGTCGAGAAGATCTTCGTCTTCCTCCTCCCTCTACAACTGGCCAAACCCTAAGTCCATGCCGCTGCTAGCCCTAGCCGAAGACGGAGACGAAGATGACGACGAACACGACCGCGATCGAGAAGGCGAGGGAGAGAACGCGTCGTCGGAGCATTCTTCATCGGACGATAAGGATGATCAGGAGAGGAGGAGGGCCCCACAGAAACTGCTCGACAGGAGGCTGAAGAGCTTCAAGTCAAAGAGTTGCTATTGCCTCTCAGATCTGCAGGAACACGATGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.36

Weight (kDa)

4.66

Isoelectric Point (pI)

68.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
AccIII TCCGGA 1 cut(s) 163
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 686
AcyI GRCGYC 3 cut(s) 6, 111, 131
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 100, 444
AflIII ACRYGT 2 cut(s) 36, 582
AgsI TTSAA 2 cut(s) 412, 676
AhdI GACNNNNNGTC 2 cut(s) 40, 145
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 2 cut(s) 144, 672
AluI AGCT 2 cut(s) 144, 672
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 649
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 4 cut(s) 16, 49, 485, 636
ApaI GGGCCC 2 cut(s) 20, 640
ApeKI GCWGC 2 cut(s) 363, 508
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 2 cut(s) 457, 671
AspLEI GCGC 2 cut(s) 58, 113
AspS9I GGNCC 6 cut(s) 16, 17, 50, 103, 636, 637
AsuNHI GCTAGC 1 cut(s) 511
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 2 cut(s) 20, 640
BalI TGGCCA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 2 cut(s) 20, 640
BbsI GAAGAC 3 cut(s) 192, 456, 531
BbvI GCAGC 2 cut(s) 375, 495
BccI CCATC 1 cut(s) 38
BceAI ACGGC 3 cut(s) 64, 220, 247
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 3 cut(s) 11, 512, 518
BfmI CTRYAG 1 cut(s) 707
BfoI RGCGCY 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 119
BglII AGATCT 2 cut(s) 455, 703
BisI GCNGC 9 cut(s) 82, 109, 114, 235, 364, 419, 422, 506, 509
BlsI GCNGC 9 cut(s) 83, 110, 115, 236, 365, 420, 423, 507, 510
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 2 cut(s) 40, 145
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 6 cut(s) 16, 17, 50, 103, 636, 637
BmiI GGNNCC 6 cut(s) 18, 19, 52, 112, 638, 639
BmtI GCTAGC 1 cut(s) 515
BpiI GAAGAC 3 cut(s) 192, 456, 531
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BsaHI GRCGYC 3 cut(s) 6, 111, 131
BsaJI CCNNGG 3 cut(s) 79, 106, 114
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 116, 119, 146, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 444
Bse1I ACTGG 1 cut(s) 488
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 3 cut(s) 79, 106, 114
BseGI GGATG 2 cut(s) 172, 622
BseLI CCNNNNNNNGG 2 cut(s) 100, 444
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 6 cut(s) 140, 255, 258, 460, 643, 646
BseSI GKGCMC 2 cut(s) 20, 640
BseXI GCAGC 2 cut(s) 375, 495
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
Bsh1285I CGRYCG 2 cut(s) 556, 562
BshFI GGCC 4 cut(s) 18, 51, 487, 638
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 2 cut(s) 556, 562
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 100, 444
BsmAI GTCTC 1 cut(s) 525
BsmBI CGTCTC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 4 cut(s) 18, 51, 487, 638
Bsp120I GGGCCC 2 cut(s) 16, 636
Bsp1286I GDGCHC 2 cut(s) 20, 640
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 6 cut(s) 272, 432, 455, 559, 619, 703
BspANI GGCC 4 cut(s) 18, 51, 487, 638
BspCNI CTCAG 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
BspLI GGNNCC 6 cut(s) 18, 19, 52, 112, 638, 639
BspMAI CTGCAG 1 cut(s) 711
BspOI GCTAGC 1 cut(s) 515
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 3 cut(s) 79, 106, 114
BssMI GATC 6 cut(s) 272, 432, 455, 559, 619, 703
BssNI GRCGYC 3 cut(s) 6, 111, 131
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 2 cut(s) 174, 662
BstACI GRCGYC 3 cut(s) 6, 111, 131
BstC8I GCNNGC 2 cut(s) 346, 513
BstDEI CTNAG 2 cut(s) 495, 700
BstDSI CCRYGG 3 cut(s) 79, 106, 114
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 172, 622
BstFNI CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 58, 113
BstKTI GATC 6 cut(s) 275, 435, 458, 562, 622, 706
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 6 cut(s) 272, 432, 455, 559, 619, 703
BstMCI CGRYCG 2 cut(s) 556, 562
BstMWI GCNNNNNNNGC 4 cut(s) 81, 119, 128, 204
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 2 cut(s) 20, 640
BstUI CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
BstV1I GCAGC 2 cut(s) 375, 495
BstV2I GAAGAC 3 cut(s) 192, 456, 531
BstX2I RGATCY 2 cut(s) 455, 703
BstYI RGATCY 2 cut(s) 455, 703
BsuRI GGCC 4 cut(s) 18, 51, 487, 638
BtgI CCRYGG 3 cut(s) 79, 106, 114
BtgZI GCGATG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 172, 622
BtsIMutI CAGTG 2 cut(s) 366, 384
Cac8I GCNNGC 2 cut(s) 346, 513
CaiI CAGNNNCTG 1 cut(s) 649
CfoI GCGC 2 cut(s) 58, 113
Cfr13I GGNCC 6 cut(s) 16, 17, 50, 103, 636, 637
Cfr42I CCGCGG 3 cut(s) 82, 109, 117
CseI GACGC 3 cut(s) 70, 120, 573
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 502
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 495, 700
DinI GGCGCC 1 cut(s) 112
DpnI GATC 6 cut(s) 274, 434, 457, 561, 621, 705
DpnII GATC 6 cut(s) 272, 432, 455, 559, 619, 703
DriI GACNNNNNGTC 2 cut(s) 40, 145
EaeI YGGCCR 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 174, 662
Eam1105I GACNNNNNGTC 2 cut(s) 40, 145
EarI CTCTTC 2 cut(s) 174, 662
EciI GGCGGA 2 cut(s) 137, 252
Eco24I GRGCYC 2 cut(s) 20, 640
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 686
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO109I RGGNCCY 3 cut(s) 17, 636, 637
EcoT38I GRGCYC 2 cut(s) 20, 640
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 1 cut(s) 505
FaiI YATR 1 cut(s) 503
FatI CATG 1 cut(s) 501
FauI CCCGC 2 cut(s) 61, 417
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 9 cut(s) 82, 109, 114, 235, 364, 419, 422, 506, 509
FokI GGATG 2 cut(s) 179, 629
FriOI GRGCYC 2 cut(s) 20, 640
Fsp4HI GCNGC 9 cut(s) 82, 109, 114, 235, 364, 419, 422, 506, 509
FspBI CTAG 3 cut(s) 11, 512, 518
GlaI GCGC 2 cut(s) 57, 112
GluI GCNGC 9 cut(s) 82, 109, 114, 235, 364, 419, 422, 506, 509
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 4 cut(s) 18, 51, 487, 638
HapII CCGG 1 cut(s) 164
HgaI GACGC 3 cut(s) 70, 120, 573
HhaI GCGC 2 cut(s) 58, 113
Hin1I GRCGYC 3 cut(s) 6, 111, 131
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 2 cut(s) 56, 111
HinP1I GCGC 2 cut(s) 56, 111
HinfI GANTC 3 cut(s) 97, 188, 284
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 6 cut(s) 139, 355, 432, 592, 607, 703
Hpy188III TCNNGA 7 cut(s) 101, 164, 298, 324, 450, 563, 623
Hpy99I CGWCG 7 cut(s) 38, 64, 136, 139, 548, 589, 592
HpyAV CCTTC 3 cut(s) 34, 376, 560
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 2 cut(s) 6, 36
HpyCH4V TGCA 2 cut(s) 217, 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 119, 128, 204
HpyF3I CTNAG 2 cut(s) 495, 700
HpySE526I ACGT 2 cut(s) 6, 36
Hsp92I GRCGYC 3 cut(s) 6, 111, 131
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 2 cut(s) 56, 111
KasI GGCGCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 619
KspI CCGCGG 3 cut(s) 82, 109, 117
Kzo9I GATC 6 cut(s) 272, 432, 455, 559, 619, 703
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 2 cut(s) 375, 495
MaeI CTAG 3 cut(s) 11, 512, 518
MaeII ACGT 2 cut(s) 6, 36
MalI GATC 6 cut(s) 274, 434, 457, 561, 621, 705
MboI GATC 6 cut(s) 272, 432, 455, 559, 619, 703
MflI RGATCY 2 cut(s) 455, 703
MhlI GDGCHC 2 cut(s) 20, 640
MlsI TGGCCA 1 cut(s) 487
MluI ACGCGT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 487
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 3 cut(s) 117, 336, 570
Mox20I TGGCCA 1 cut(s) 487
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 457, 671
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 4 cut(s) 81, 108, 116, 508
MspI CCGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 6 cut(s) 56, 81, 108, 116, 558, 584
MwoI GCNNNNNNNGC 4 cut(s) 81, 119, 128, 204
NarI GGCGCC 1 cut(s) 111
NdeII GATC 6 cut(s) 272, 432, 455, 559, 619, 703
NheI GCTAGC 1 cut(s) 511
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 6 cut(s) 18, 19, 52, 112, 638, 639
PciSI GCTCTTC 1 cut(s) 662
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 540, 549
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 2 cut(s) 457, 671
PfeI GAWTC 2 cut(s) 97, 284
PkrI GCNGC 9 cut(s) 83, 110, 115, 236, 365, 420, 423, 507, 510
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 182
PspN4I GGNNCC 6 cut(s) 18, 19, 52, 112, 638, 639
PspOMI GGGCCC 2 cut(s) 16, 636
PspPI GGNCC 6 cut(s) 16, 17, 50, 103, 636, 637
PstI CTGCAG 1 cut(s) 711
PstNI CAGNNNCTG 1 cut(s) 649
PsuI RGATCY 2 cut(s) 455, 703
PvuI CGATCG 1 cut(s) 562
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 35
SacII CCGCGG 3 cut(s) 82, 109, 117
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 9 cut(s) 82, 109, 114, 235, 364, 419, 422, 506, 509
Sau3AI GATC 6 cut(s) 272, 432, 455, 559, 619, 703
Sau96I GGNCC 6 cut(s) 16, 17, 50, 103, 636, 637
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 2 cut(s) 20, 640
SetI ASST 8 cut(s) 9, 26, 39, 96, 146, 216, 390, 674
SfcI CTRYAG 1 cut(s) 707
SfoI GGCGCC 1 cut(s) 112
Sfr303I CCGCGG 3 cut(s) 82, 109, 117
SgrBI CCGCGG 3 cut(s) 82, 109, 117
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 35
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 3 cut(s) 11, 512, 518
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 2 cut(s) 9, 39
TaqI TCGA 5 cut(s) 33, 279, 449, 562, 654
TauI GCSGC 7 cut(s) 84, 111, 116, 237, 421, 424, 508
TfiI GAWTC 2 cut(s) 97, 284
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 373, 384
TseI GCWGC 2 cut(s) 363, 508
TspDTI ATGAA 2 cut(s) 255, 591
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 2 cut(s) 373, 384
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 98
XmnI GAANNNNTTC 2 cut(s) 457, 671
XspI CTAG 3 cut(s) 11, 512, 518
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.