Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Reverse (-)

8746594 .. 8747290

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCACTGATAGAGAGAATCTGCTCTCCGATGATTATGAAGAAACGGCTGCGTTTTGTGGATGTGGGTACTTTCGTAGTTTCAGTTTCACCCGGTGGCGGAGAGGAGACGACGAGTCTCGCAGTCGCGGTGGCTGGAGTGGTTGTTTGCAGGAAGAAAGAAGAGGGAATTGGGGAAGTGAGAAACTTAAGGGGCTAAAAGAGATTTCTGAGAAAATCGCGGGACCAAAGTGGAAAAACTTTATAAGAAGTTTTAGTAGTGGCAGGAAGAAGATGAGGAGAGATGTTGATTTCACTTATGATCTGAAAAACTATAGTCTTAATTTCGATGACGGCGGCGACGGCAAAGATTCTTCACCGGAGAGGTTTGTAGCTCCGGTTGTCATCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

15.09

Weight (kDa)

8.79

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccII	CGCG	2 cut(s)	129, 221
AciI	CCGC	4 cut(s)	100, 129, 221, 336
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflII	CTTAAG	1 cut(s)	188
AhdI	GACNNNNNGTC	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	102, 123
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	82, 348
AvaII	GGWCC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	61, 94
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	3 cut(s)	63, 349, 358
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	102, 123
BfmI	CTRYAG	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	51, 337
BlsI	GCNGC	2 cut(s)	52, 338
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	94
BsaWI	WCCGGW	2 cut(s)	358, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	120, 292
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	129, 221
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	94, 359, 377
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	102, 123
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	4 cut(s)	100, 129, 221, 336
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	129, 221
BspLI	GGNNCC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	188
BssMI	GATC	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	129, 221
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	102, 123
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	2 cut(s)	129, 221
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	5 cut(s)	5, 50, 135, 196, 374
CviKI_1	RGCY	5 cut(s)	5, 50, 135, 196, 374
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	102
FaiI	YATR	4 cut(s)	39, 245, 300, 315
FaqI	GGGAC	1 cut(s)	237
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	51, 337
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	51, 337
GluI	GCNGC	2 cut(s)	51, 337
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	94, 359, 377
HinfI	GANTC	3 cut(s)	19, 116, 350
HpaII	CCGG	3 cut(s)	94, 359, 377
HphI	GGTGA	2 cut(s)	82, 348
Hpy188I	TCNGA	3 cut(s)	31, 211, 306
Hpy99I	CGWCG	2 cut(s)	116, 344
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	107, 121, 137, 250, 372, 390
Lsp1109I	GCAGC	1 cut(s)	37
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	6 cut(s)	53, 167, 174, 280, 283, 345
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	169, 322
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	98, 158, 270, 357
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	189, 321, 394
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	94, 359, 377
MspR9I	CCNGG	1 cut(s)	94
MvnI	CGCG	2 cut(s)	129, 221
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	19, 350
PkrI	GCNGC	2 cut(s)	52, 338
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	189, 321, 394
SatI	GCNGC	2 cut(s)	51, 337
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	2 cut(s)	368, 376
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	169, 322
SsiI	CCGC	4 cut(s)	100, 129, 221, 336
StyD4I	CCNGG	1 cut(s)	92
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	169, 322
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	19, 350
Tru1I	TTAA	3 cut(s)	189, 321, 394
Tru9I	TTAA	3 cut(s)	189, 321, 394
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.