Prupe.7G254800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0005741
Physical Location & Seq
Reverse (-)
21411531 .. 21412151
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G254800.1

Sequence Viewer

Length: 621 bp
ATGGCGATGGCTAGTAACAATGAACACAAACCAACCTTGATCATGAACCACACTTCGCCCATCTACGAGTACGAACGTTATGAAGGAGAAGACTTGGATGACTATCATCAAGACCAGGATGCTTCTTCTTCTTCTTCTTCTTCTCCTCCTTGTGGTGTTGGTGATTGTTTTGGCCTCTTTGGGTTCACATCATGTACATGGCGGCAAAACCACGACAACGATTATGAACGTAAATACTTACTGCAGCAAGAAGGTGGATGGCACAAGGAGACGACATGGTGGTGGAGGAAGAAATTGACCAAGGCTAAGGAGTCTACTCAAGTATTGGACGGCTCCAAGTGGAAGACCTTCATCAGAAAGATTGCTGGATATTGCAAGACTATGAAGCAAAAACAAAACAACAGGTTGTCCAAGAAACAAAAGCAAAAGAATACTAGATTTCAGTATGATTTTCATAGTTATGCTCTCAATTTTGATGGCGGTGTTGCTAGAGAAGGAAATGATGCTGCTCTTGATTTTGCAGCAAGGTTTGCCGCTCCTTTGTCTAATGAGCATGGTTCCATAGGCAGGCCGGTTCATGAAACCACCCTTGAATCAGCTTCTATAGAATCCAAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.73

Weight (kDa)

8.26

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 314
AciI CCGC 3 cut(s) 202, 480, 534
AclI AACGTT 2 cut(s) 76, 616
AfaI GTAC 2 cut(s) 71, 196
AfiI CCNNNNNNNGG 2 cut(s) 152, 567
AgsI TTSAA 1 cut(s) 593
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 599
AluI AGCT 1 cut(s) 599
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 172, 569
ApeKI GCWGC 3 cut(s) 244, 506, 521
Asp700I GAANNNNTTC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 96, 350
BbvI GCAGC 3 cut(s) 256, 493, 533
BccI CCATC 3 cut(s) 68, 252, 470
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 3 cut(s) 12, 435, 489
BfmI CTRYAG 2 cut(s) 242, 603
BisI GCNGC 5 cut(s) 203, 245, 507, 522, 534
BlsI GCNGC 5 cut(s) 204, 246, 508, 523, 535
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 334, 559
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 109, 493
BpiI GAAGAC 2 cut(s) 96, 350
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 567
Bse118I RCCGGY 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 3 cut(s) 103, 124, 263
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 152, 567
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 256, 493, 533
BshFI GGCC 2 cut(s) 174, 571
BsiSI CCGG 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 152, 567
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsnI GGCC 2 cut(s) 174, 571
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 3 cut(s) 202, 480, 534
BspANI GGCC 2 cut(s) 174, 571
BspHI TCATGA 2 cut(s) 42, 577
BspLI GGNNCC 2 cut(s) 334, 559
BspMAI CTGCAG 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 571
BsrGI TGTACA 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 569
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 103, 124, 263
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 242, 603
BstV1I GCAGC 3 cut(s) 256, 493, 533
BstV2I GAAGAC 2 cut(s) 96, 350
BsuRI GGCC 2 cut(s) 174, 571
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 103, 124, 263
Cac8I GCNNGC 1 cut(s) 569
CciI TCATGA 2 cut(s) 42, 577
Cfr10I RCCGGY 1 cut(s) 571
Csp6I GTAC 2 cut(s) 70, 195
CviAII CATG 6 cut(s) 43, 192, 198, 276, 554, 578
CviJI RGCY 6 cut(s) 11, 174, 305, 333, 571, 599
CviKI_1 RGCY 6 cut(s) 11, 174, 305, 333, 571, 599
CviQI GTAC 2 cut(s) 70, 195
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 6 cut(s) 46, 195, 201, 279, 557, 581
FatI CATG 6 cut(s) 42, 191, 197, 275, 553, 577
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 5 cut(s) 203, 245, 507, 522, 534
FokI GGATG 3 cut(s) 110, 131, 270
Fsp4HI GCNGC 5 cut(s) 203, 245, 507, 522, 534
FspBI CTAG 3 cut(s) 12, 435, 489
GluI GCNGC 5 cut(s) 203, 245, 507, 522, 534
HaeIII GGCC 2 cut(s) 174, 571
HapII CCGG 1 cut(s) 572
Hin1II CATG 6 cut(s) 46, 195, 201, 279, 557, 581
HinfI GANTC 3 cut(s) 311, 593, 608
HpaII CCGG 1 cut(s) 572
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 186, 315
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 4 cut(s) 43, 110, 512, 578
Hpy8I GTNNAC 2 cut(s) 186, 315
HpyAV CCTTC 4 cut(s) 77, 245, 358, 488
HpyCH4IV ACGT 3 cut(s) 76, 229, 616
HpyCH4V TGCA 3 cut(s) 244, 375, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 3 cut(s) 76, 229, 616
Hsp92II CATG 6 cut(s) 46, 195, 201, 279, 557, 581
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 338, 541
LpnPI CCDG 6 cut(s) 101, 128, 351, 388, 553, 585
Lsp1109I GCAGC 3 cut(s) 256, 493, 533
LweI GCATC 2 cut(s) 109, 493
MaeI CTAG 3 cut(s) 12, 435, 489
MaeII ACGT 3 cut(s) 76, 229, 616
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 536
MboI GATC 1 cut(s) 39
MboII GAAGA 9 cut(s) 101, 117, 120, 123, 126, 129, 132, 301, 355
MluCI AATT 2 cut(s) 293, 469
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 3 cut(s) 156, 185, 279
MroXI GAANNNNTTC 1 cut(s) 347
MslI CAYNNNNRTG 3 cut(s) 196, 280, 459
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 1 cut(s) 39
NlaIII CATG 6 cut(s) 46, 195, 201, 279, 557, 581
NlaIV GGNNCC 2 cut(s) 334, 559
PagI TCATGA 2 cut(s) 42, 577
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 593, 608
PkrI GCNGC 5 cut(s) 204, 246, 508, 523, 535
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp1406I AACGTT 2 cut(s) 76, 616
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 334, 559
PstI CTGCAG 1 cut(s) 246
RsaI GTAC 2 cut(s) 71, 196
RsaNI GTAC 2 cut(s) 70, 195
RseI CAYNNNNRTG 3 cut(s) 196, 280, 459
SatI GCNGC 5 cut(s) 203, 245, 507, 522, 534
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 116
SetI ASST 9 cut(s) 38, 79, 232, 256, 350, 407, 530, 601, 619
SfaNI GCATC 2 cut(s) 109, 493
SfcI CTRYAG 2 cut(s) 242, 603
SmiMI CAYNNNNRTG 3 cut(s) 196, 280, 459
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 293, 469
SsiI CCGC 3 cut(s) 202, 480, 534
SspMI CTAG 3 cut(s) 12, 435, 489
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 3 cut(s) 79, 232, 619
TasI AATT 2 cut(s) 293, 469
TatI WGTACW 1 cut(s) 194
TauI GCSGC 2 cut(s) 205, 536
TfiI GAWTC 2 cut(s) 593, 608
TseI GCWGC 3 cut(s) 244, 506, 521
TspDTI ATGAA 9 cut(s) 36, 59, 96, 240, 340, 398, 443, 566, 594
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 3 cut(s) 12, 435, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.