FvH4_4g18840

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005741
Physical Location & Seq
Reverse (-)
22645311 .. 22646827
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18840.t1

Sequence Viewer

Length: 735 bp
ATGGAGATGGAGAAGAAGGAAGTGGTCATAGATCACTATAGTGTTCTTGGTTCACCTTCGGGTAAGGAAAAGGCTTTGCAGTTGCATCCAGACAAGAGGCTAAACGATCTCAATGCCAATGCCATGTTCCAAAGGCTCAACTCATCCTATGCGATACTCAGAGATCCAAAAGCCCGAAAACAGGTTGGCCAAAAGGTAGTTCTCAATGATCTTGAACAAACCAGCGGCTCTTTCTTTTCCGGCCTTGACATGCTCTTCCTTGATCTCAACCTCTCCTTTGCAATGGTAGTGGCTGGTGCTCTTGATGATGGAGCCAGTTGGAGATGCCACCAACTTAATCTCATAAGAGATTTTCTCAACCTTGTCACCGATAGCATCACCTTCGATTATGCTGTAGTTATAAACAAAGTTGTCTTTGTCAAGTCCATCAATCTGATGCTTCACATAGCTGTATTCGCTTCCTTCACCGAGGTGAATCTTCTTGATGGTTCCTACACCTCCATCTCCCTCAACGATTTCGGTACTCTTCACAGCCTGTGGGGCAATTTTGGGGATGAGGTTGTCGGCATCAAGAACAAAGGCCTTGTAGAGTCTTGGTGGTGGGATGCAGAGGTGAACTCAGTTTCATATGTAAAAACACCCATGATGAGGATTAAAGAGCTTAATATGAGAAGATTGAAATGTGGAGGAGGCTTAGAGAATGTTGGTATTGGTGTGAGAAAGTGTAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

245

Amino Acids

27.32

Weight (kDa)

6.96

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 23 - 61 2.6e-07 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 181, 648
AgsI TTSAA 2 cut(s) 215, 679
AjuI GAANNNNNNNTTGG 4 cut(s) 110, 142, 183, 215
AleI CACNNNNGTG 2 cut(s) 39, 470
AluBI AGCT 2 cut(s) 449, 661
AluI AGCT 2 cut(s) 449, 661
Alw21I GWGCWC 1 cut(s) 301
AlwI GGATC 1 cut(s) 158
AoxI GGCC 3 cut(s) 187, 241, 580
AsuHPI GGTGA 6 cut(s) 45, 358, 370, 457, 484, 625
BalI TGGCCA 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 301
BccI CCATC 4 cut(s) 302, 434, 479, 509
BcgI CGANNNNNNTGC 4 cut(s) 95, 129, 364, 398
BfaI CTAG 1 cut(s) 733
BfmI CTRYAG 2 cut(s) 37, 393
BglI GCCNNNNNGGC 1 cut(s) 540
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 313, 490
BmsI GCATC 6 cut(s) 94, 314, 384, 426, 576, 595
BplI GAGNNNNNCTC 4 cut(s) 339, 371, 602, 634
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 648
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 4 cut(s) 85, 143, 559, 610
BseLI CCNNNNNNNGG 2 cut(s) 181, 648
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 172, 633
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 702
BshFI GGCC 3 cut(s) 189, 243, 582
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 181, 648
BsnI GGCC 3 cut(s) 189, 243, 582
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 5 cut(s) 31, 106, 163, 208, 262
BspACI CCGC 1 cut(s) 225
BspANI GGCC 3 cut(s) 189, 243, 582
BspCNI CTCAG 2 cut(s) 171, 632
BspLI GGNNCC 2 cut(s) 313, 490
BspPI GGATC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 5 cut(s) 31, 106, 163, 208, 262
Bst6I CTCTTC 2 cut(s) 260, 531
BstDEI CTNAG 3 cut(s) 158, 619, 694
BstF5I GGATG 4 cut(s) 85, 143, 559, 610
BstKTI GATC 5 cut(s) 34, 109, 166, 211, 265
BstMBI GATC 5 cut(s) 31, 106, 163, 208, 262
BstMWI GCNNNNNNNGC 2 cut(s) 455, 540
BstNSI RCATGY 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 37, 393
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 3 cut(s) 189, 243, 582
BtsCI GGATG 4 cut(s) 85, 143, 559, 610
Csp6I GTAC 1 cut(s) 522
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 3 cut(s) 124, 250, 643
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 3 cut(s) 158, 619, 694
DpnI GATC 5 cut(s) 33, 108, 165, 210, 264
DpnII GATC 5 cut(s) 31, 106, 163, 208, 262
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 260, 531
EarI CTCTTC 2 cut(s) 260, 531
Eco147I AGGCCT 1 cut(s) 582
FaeI CATG 3 cut(s) 127, 253, 646
FatI CATG 3 cut(s) 123, 249, 642
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 4 cut(s) 72, 130, 566, 617
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 733
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 3 cut(s) 189, 243, 582
HapII CCGG 1 cut(s) 240
Hin1II CATG 3 cut(s) 127, 253, 646
HinfI GANTC 2 cut(s) 475, 590
HpaII CCGG 1 cut(s) 240
HphI GGTGA 6 cut(s) 45, 358, 370, 457, 484, 625
Hpy166II GTNNAC 2 cut(s) 53, 616
Hpy188I TCNGA 2 cut(s) 161, 435
Hpy188III TCNNGA 5 cut(s) 89, 212, 302, 482, 571
Hpy8I GTNNAC 2 cut(s) 53, 616
HpyAV CCTTC 4 cut(s) 10, 66, 391, 472
HpyCH4V TGCA 4 cut(s) 79, 85, 281, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 540
HpyF3I CTNAG 3 cut(s) 158, 619, 694
Hsp92II CATG 3 cut(s) 127, 253, 646
Kzo9I GATC 5 cut(s) 31, 106, 163, 208, 262
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 7 cut(s) 102, 167, 235, 253, 279, 328, 548
LweI GCATC 6 cut(s) 94, 314, 384, 426, 576, 595
MaeI CTAG 1 cut(s) 733
MaeIII GTNAC 1 cut(s) 364
MalI GATC 5 cut(s) 33, 108, 165, 210, 264
MboI GATC 5 cut(s) 31, 106, 163, 208, 262
MboII GAAGA 5 cut(s) 25, 247, 470, 518, 684
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 301
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 1 cut(s) 544
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 299
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 336, 654, 663
MslI CAYNNNNRTG 2 cut(s) 39, 470
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 455, 540
NdeI CATATG 1 cut(s) 628
NdeII GATC 5 cut(s) 31, 106, 163, 208, 262
NlaIII CATG 3 cut(s) 127, 253, 646
NlaIV GGNNCC 2 cut(s) 313, 490
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 2 cut(s) 39, 470
PceI AGGCCT 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PsiI TTATAA 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 313, 490
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 2 cut(s) 39, 470
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 336, 654, 663
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 5 cut(s) 31, 106, 163, 208, 262
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 6 cut(s) 94, 314, 384, 426, 576, 595
SfcI CTRYAG 2 cut(s) 37, 393
SmiMI CAYNNNNRTG 2 cut(s) 39, 470
Sse9I AATT 1 cut(s) 544
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 733
StuI AGGCCT 1 cut(s) 582
TaqI TCGA 1 cut(s) 384
TasI AATT 1 cut(s) 544
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 3 cut(s) 336, 654, 663
Tru9I TTAA 3 cut(s) 336, 654, 663
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 615
XceI RCATGY 1 cut(s) 253
XspI CTAG 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.