Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Forward (+)

12600061 .. 12606555

Gene Structure 6495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1160500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTCCAAGAGGTAGTTCTCAATCAACTTAAAGAGGTGGGAGGCCTTCTCTTTGCCAGCCTTAACATGCTCTTCCTTGATCTCAACATCACCTTTGGTGTGGTAGTGGTGGCTGGTGCTCTTAATGACAGAACCGCTGCCGGAAGCAACCAACTTAGTCTCATAAGAGATCTTCTCTATTGTCTCAGAGATAGCATCTCCTTCGATCACACTGTACTTGTAGACAAAGTTGTCCTTGTCAACCCCATCAATTCTGTGCTTCACGTAGCTGTATGTGCTACCTTCACCGAAGTTGATCTTCTTAATAGTTCCAACTCCGCCATCTCCTTCAAGGATCTCAGCGCTCTTCACTGCTTGTGGTGCAATCTTGGGGATGAGGTTGTCAGCATCAAGAACAAAGGCATTGAACAACCTAGCAGGGGGGATGATAGAGGTGAACTCGGATTCGTATCAAGTCTTAGCAAGATTGTAATTTGTTCGTTATGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.63

Weight (kDa)

4.86

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	2 cut(s)	135, 318
AclWI	GGATC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	216
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	331, 407
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	164, 188
AlwI	GGATC	1 cut(s)	342
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	82, 277, 446
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	254, 329
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BcoDI	GTCTC	2 cut(s)	164, 188
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	345
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmsI	GCATC	2 cut(s)	204, 396
BplI	GAGNNNNNCTC	6 cut(s)	33, 65, 159, 191, 423, 455
BsaAI	YACGTR	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	448
BseGI	GGATG	2 cut(s)	379, 430
BseJI	GATNNNNATC	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	199, 352
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	164, 188
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	79, 169, 205, 295, 334
BspACI	CCGC	2 cut(s)	135, 318
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	198, 351
BspPI	GGATC	1 cut(s)	342
BspQI	GCTCTTC	2 cut(s)	77, 351
BssMI	GATC	5 cut(s)	79, 169, 205, 295, 334
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	77, 351
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	155, 185, 338, 458
BstF5I	GGATG	2 cut(s)	379, 430
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	5 cut(s)	82, 172, 208, 298, 337
BstMAI	GTCTC	2 cut(s)	164, 188
BstMBI	GATC	5 cut(s)	79, 169, 205, 295, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 360
BstNSI	RCATGY	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	169, 334
BstYI	RGATCY	2 cut(s)	169, 334
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	379, 430
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	210, 349
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	45, 60, 113, 269
CviKI_1	RGCY	4 cut(s)	45, 60, 113, 269
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	4 cut(s)	155, 185, 338, 458
DpnI	GATC	5 cut(s)	81, 171, 207, 297, 336
DpnII	GATC	5 cut(s)	79, 169, 205, 295, 334
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	77, 351
EarI	CTCTTC	2 cut(s)	77, 351
EciI	GGCGGA	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	343
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 164, 274, 484, 488
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 282, 314
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	386, 437
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	82, 277, 446
Hpy166II	GTNNAC	3 cut(s)	223, 241, 437
Hpy188I	TCNGA	2 cut(s)	188, 443
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	3 cut(s)	223, 241, 437
HpyAV	CCTTC	4 cut(s)	56, 211, 292, 337
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 360
HpyF3I	CTNAG	4 cut(s)	155, 185, 338, 458
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	79, 169, 205, 295, 334
LguI	GCTCTTC	2 cut(s)	77, 351
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	70, 99, 154, 403
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	204, 396
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	264
MalI	GATC	5 cut(s)	81, 171, 207, 297, 336
MboI	GATC	5 cut(s)	79, 169, 205, 295, 334
MboII	GAAGA	4 cut(s)	64, 164, 290, 338
MflI	RGATCY	2 cut(s)	169, 334
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	2 cut(s)	250, 471
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	4, 28, 35, 370, 425
MseI	TTAA	4 cut(s)	30, 63, 123, 303
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	275, 360
NdeII	GATC	5 cut(s)	79, 169, 205, 295, 334
NlaIII	CATG	1 cut(s)	70
NspI	RCATGY	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	2 cut(s)	77, 351
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	169, 334
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SapI	GCTCTTC	2 cut(s)	77, 351
SaqAI	TTAA	4 cut(s)	30, 63, 123, 303
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	79, 169, 205, 295, 334
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	9 cut(s)	15, 39, 95, 267, 271, 284, 381, 415, 436
SfaNI	GCATC	2 cut(s)	204, 396
Sse9I	AATT	2 cut(s)	250, 471
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	135, 318
SspMI	CTAG	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	250, 471
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	4 cut(s)	30, 63, 123, 303
Tru9I	TTAA	4 cut(s)	30, 63, 123, 303
TscAI	CASTG	2 cut(s)	217, 356
TseI	GCWGC	1 cut(s)	137
TspRI	CASTG	2 cut(s)	217, 356
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.