pycom08g13080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0005741
Physical Location & Seq
Forward (+)
11714364 .. 11714792
429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13080.1

Sequence Viewer

Length: 429 bp
ATGCTCTTCCTTGATCTCAATGTCACCTTTGGTGTGGTAGTGGCTAGTGCTCTTGATGACAGAACCGCTGCTGGAAGCAACCAACTTAGTCTCATAAGAGATCTTCTCAATCGTCTCAGAGATAGCATCTCCTTCAATCACACTATACTTGTAGACAAAGTTGTCCTTGTCAACCCCATCAATTATGTGCTTCACATAGCTGTATGTGCTACCTTCACCGAAGTTGATCTTCTTAATGGTTCCAACTCCGCCATCTCCTTCAAGGATCTCAGTGCTCTTCACTGCTTGTGGTGCAATCTTGGGGATGAGGTTGTCAGCATCAAGAACAAAGGCATTGAACAACCTAGCAGGAGGAATGGCGGAAGTGAACTCAGATTCATATGTGAATACACCCATGATTCTGAGATGCGTTTGGGAAGTGTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.68

Weight (kDa)

5.74

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 153
AciI CCGC 3 cut(s) 66, 249, 360
AclWI GGATC 1 cut(s) 273
AgsI TTSAA 3 cut(s) 136, 262, 338
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 2 cut(s) 52, 277
Alw26I GTCTC 2 cut(s) 95, 119
AlwI GGATC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 16, 208
Bbv12I GWGCWC 2 cut(s) 52, 277
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 185, 260
BcoDI GTCTC 2 cut(s) 95, 119
BfaI CTAG 2 cut(s) 45, 345
BglII AGATCT 1 cut(s) 100
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 3 cut(s) 135, 327, 396
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 130, 283, 385, 393
BseXI GCAGC 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 52, 277
BsmAI GTCTC 2 cut(s) 95, 119
BsmBI CGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 52, 277
Bsp143I GATC 4 cut(s) 13, 100, 226, 265
BspACI CCGC 3 cut(s) 66, 249, 360
BspCNI CTCAG 4 cut(s) 129, 282, 384, 394
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 2 cut(s) 11, 282
BssMI GATC 4 cut(s) 13, 100, 226, 265
Bst6I CTCTTC 2 cut(s) 11, 282
BstDEI CTNAG 5 cut(s) 86, 116, 269, 371, 402
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 4 cut(s) 16, 103, 229, 268
BstMAI GTCTC 2 cut(s) 95, 119
BstMBI GATC 4 cut(s) 13, 100, 226, 265
BstMWI GCNNNNNNNGC 2 cut(s) 206, 291
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 100, 265
BstYI RGATCY 2 cut(s) 100, 265
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 277, 280
CviAII CATG 1 cut(s) 395
CviJI RGCY 2 cut(s) 44, 200
CviKI_1 RGCY 2 cut(s) 44, 200
DdeI CTNAG 5 cut(s) 86, 116, 269, 371, 402
DpnI GATC 4 cut(s) 15, 102, 228, 267
DpnII GATC 4 cut(s) 13, 100, 226, 265
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 2 cut(s) 11, 282
EarI CTCTTC 2 cut(s) 11, 282
EciI GGCGGA 2 cut(s) 238, 375
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 398
FaiI YATR 8 cut(s) 95, 146, 186, 197, 205, 380, 382, 396
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 213, 245
FatI CATG 1 cut(s) 394
FauNDI CATATG 1 cut(s) 380
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 45, 345
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 398
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 375, 398
HphI GGTGA 2 cut(s) 16, 208
Hpy166II GTNNAC 3 cut(s) 154, 172, 368
Hpy188I TCNGA 3 cut(s) 119, 374, 403
Hpy188III TCNNGA 2 cut(s) 53, 322
Hpy8I GTNNAC 3 cut(s) 154, 172, 368
HpyAV CCTTC 3 cut(s) 142, 223, 268
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 291
HpyF3I CTNAG 5 cut(s) 86, 116, 269, 371, 402
Hsp92II CATG 1 cut(s) 398
Kzo9I GATC 4 cut(s) 13, 100, 226, 265
LguI GCTCTTC 2 cut(s) 11, 282
LpnPI CCDG 2 cut(s) 57, 334
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 3 cut(s) 135, 327, 396
MaeI CTAG 2 cut(s) 45, 345
MaeIII GTNAC 1 cut(s) 22
MalI GATC 4 cut(s) 15, 102, 228, 267
MboI GATC 4 cut(s) 13, 100, 226, 265
MboII GAAGA 3 cut(s) 95, 221, 269
MflI RGATCY 2 cut(s) 100, 265
MhlI GDGCHC 2 cut(s) 52, 277
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 2 cut(s) 301, 345
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 206, 291
NdeI CATATG 1 cut(s) 380
NdeII GATC 4 cut(s) 13, 100, 226, 265
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 22
PciSI GCTCTTC 2 cut(s) 11, 282
PfeI GAWTC 2 cut(s) 375, 398
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 100, 265
SapI GCTCTTC 2 cut(s) 11, 282
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 13, 100, 226, 265
SduI GDGCHC 2 cut(s) 52, 277
SetI ASST 5 cut(s) 29, 202, 215, 312, 346
SfaNI GCATC 3 cut(s) 135, 327, 396
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 66, 249, 360
SspMI CTAG 2 cut(s) 45, 345
TasI AATT 1 cut(s) 181
TfiI GAWTC 2 cut(s) 375, 398
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 277, 287
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 367
TspRI CASTG 2 cut(s) 277, 287
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 45, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.