Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Forward (+)

90959285 .. 90959821

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGCGACCACCCTTCAATCCCAATGAGCGAGAGTCATGACCATGATCAAGGAGAAGTAGTAGAGATCGATGGCTATGAAGAGGATGGCCCGGCTTGTTATCATGGCTGTTTAGGGGTTTTCAGGCTCCCATGGAAGCAAAGCAGCAGCGAGAATGAAGGTAAGTATCTATTGGGAGGATCAGGATGCAACGCTAGCTCTAAGGAGGTGACATGGTGGAGGAAGAAGCTGAACAAGGCTTGGGAGTTTACAGAGGTTTATGGAGGGCCAAAGTGGAAGAACTTGGTTAGGAAGATTGGTGCATATTGCAGGGGGTGTAGGAAGCAAAAAGATAGATTGTGCAAGAAAAAGAAGCCAAAGAATAGGTTCCAGTATGATATGAATAGCTATAATCTCAATTTTGATAACGGCGGTGAAGGTAGATATGGAGAGAATCCGGTTGCTAATTTCTCAGCAAGGTTTGCAGCTCCTTCGAGTTTGGTTTCTCAGCAGGGTCCGGTTGTTAGTGTACATGCTTCTGAAGAATCTGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.99

Weight (kDa)

8.16

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	4 cut(s)	198, 229, 387, 467
AluI	AGCT	4 cut(s)	198, 229, 387, 467
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	88, 266
ApeKI	GCWGC	3 cut(s)	144, 147, 464
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	89, 266, 494
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	220, 425
AsuNHI	GCTAGC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	156, 159, 476
BccI	CCATC	2 cut(s)	65, 80
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	3 cut(s)	145, 148, 465
BlsI	GCNGC	3 cut(s)	146, 149, 466
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	89, 266, 494
BmiI	GGNNCC	3 cut(s)	128, 368, 495
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	176
BmtI	GCTAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	2 cut(s)	436, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	91, 191
BseMII	CTCAG	2 cut(s)	465, 500
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	3 cut(s)	156, 159, 476
BshFI	GGCC	2 cut(s)	90, 268
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	92, 437, 497
BsnI	GGCC	2 cut(s)	90, 268
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	46, 66, 179
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	90, 268
BspCNI	CTCAG	2 cut(s)	464, 499
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	128, 368, 495
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	3 cut(s)	46, 66, 179
BssT1I	CCWWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	201, 451, 486
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	91, 191
BstKTI	GATC	3 cut(s)	49, 69, 182
BstMBI	GATC	3 cut(s)	46, 66, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 461
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	156, 159, 476
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	90, 268
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	91, 191
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	89, 266, 494
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	6 cut(s)	38, 44, 104, 132, 213, 512
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	201, 451, 486
DpnI	GATC	3 cut(s)	48, 68, 181
DpnII	GATC	3 cut(s)	46, 66, 179
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	6 cut(s)	41, 47, 107, 135, 216, 515
FatI	CATG	6 cut(s)	37, 43, 103, 131, 212, 511
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	145, 148, 465
FokI	GGATG	2 cut(s)	98, 198
Fsp4HI	GCNGC	3 cut(s)	145, 148, 465
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	3 cut(s)	145, 148, 465
HaeIII	GGCC	2 cut(s)	90, 268
HapII	CCGG	3 cut(s)	92, 437, 497
Hin1II	CATG	6 cut(s)	41, 47, 107, 135, 216, 515
HinfI	GANTC	3 cut(s)	34, 433, 524
HpaII	CCGG	3 cut(s)	92, 437, 497
HphI	GGTGA	2 cut(s)	220, 425
Hpy166II	GTNNAC	2 cut(s)	249, 509
Hpy188I	TCNGA	2 cut(s)	520, 529
Hpy188III	TCNNGA	2 cut(s)	38, 183
Hpy8I	GTNNAC	2 cut(s)	249, 509
HpyAV	CCTTC	5 cut(s)	24, 152, 410, 480, 524
HpyCH4V	TGCA	5 cut(s)	189, 302, 309, 342, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 461
HpyF3I	CTNAG	3 cut(s)	201, 451, 486
Hsp92II	CATG	6 cut(s)	41, 47, 107, 135, 216, 515
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	46, 66, 179
LmnI	GCTCC	2 cut(s)	132, 472
LpnPI	CCDG	8 cut(s)	105, 109, 168, 295, 383, 450, 476, 510
Lsp1109I	GCAGC	3 cut(s)	156, 159, 476
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	48, 68, 181
MboI	GATC	3 cut(s)	46, 66, 179
MboII	GAAGA	5 cut(s)	92, 235, 289, 304, 533
MluCI	AATT	2 cut(s)	397, 445
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	76, 170, 199, 213, 247, 257
MroXI	GAANNNNTTC	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	3 cut(s)	92, 437, 497
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	195, 461
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	46, 66, 179
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	6 cut(s)	41, 47, 107, 135, 216, 515
NlaIV	GGNNCC	3 cut(s)	128, 368, 495
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	515
PagI	TCATGA	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	433, 524
PkrI	GCNGC	3 cut(s)	146, 149, 466
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	128, 368, 495
PspPI	GGNCC	3 cut(s)	89, 266, 494
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	42
SatI	GCNGC	3 cut(s)	145, 148, 465
Sau3AI	GATC	3 cut(s)	46, 66, 179
Sau96I	GGNCC	3 cut(s)	89, 266, 494
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	2 cut(s)	397, 445
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	131
TaqI	TCGA	2 cut(s)	69, 473
TasI	AATT	2 cut(s)	397, 445
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	433, 524
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	144, 147, 464
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	93, 171, 395
VpaK11BI	GGWCC	1 cut(s)	494
XceI	RCATGY	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.