Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Forward (+)

9709668 .. 9710503

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCACATCGAATAATAGAAGCACAATATTCACTCCACTCAGAAGCTCCAATCACAAGCCAAAACACTGTTTCAAAACTTAAAGAAAAAGGGAATGAAAACCACACATTGTTTGATGCCAAAAGAGCACACAACTACTTAATAATACTTTTTGTGGTAGCAGGCAATATTAATTTAGTTGTAGGCATCCTGGTGCTCCAAGAGGTAGTTCTCAATCAACTTGAAGAGGTGGGAGGCCTTCTCTTTGCCAGCCTTAACATGCTCTTCTTTGATCTCAACGTCACCCTTGGTGTGGTAGTGGCTGGTGCTCTTAATGACGCAACCGCTGCCGGAAGCCACCAACTTAGTCTCATAAGAGATCTTCTCAATTGTCTCAGAGATGGCATCTCCTTCAATCACACTGTACTTGTAGACAAAGTTTTCCTTGTCAACCCCATCAATTCTGTGCTTCACATAGCTGTATCTGCTACCTTCACCGAAGTTGATCTTCTTAATGGTTCCAACGCCGCCATCTCCTTCAAGGATCTCAGCGCTTTTCACTGCTTGTGGTGCAATCTTGGGGATGAGATTGTCAGCATCAAGAACAAAGGCATTGAACAATCTAGCAGGGGGGATGACGGAGGCGAACTCAGATTCGTATGTGAAGACACCCATGATTCTGAGATGCGTTTGGGAAGTGAGGAAAAACTAATTGATAAAGAGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

25.84

Weight (kDa)

4.89

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	2 cut(s)	324, 507
AclWI	GGATC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	405
AfeI	AGCGCT	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	75, 224, 394, 520, 596
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	2 cut(s)	47, 458
AluI	AGCT	2 cut(s)	47, 458
Alw21I	GWGCWC	3 cut(s)	130, 198, 310
Alw26I	GTCTC	2 cut(s)	353, 377
AlwI	GGATC	1 cut(s)	531
Aor51HI	AGCGCT	1 cut(s)	532
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	274, 466
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	3 cut(s)	130, 198, 310
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	374, 443, 518
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	353, 377
BfaI	CTAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	534
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	2 cut(s)	327, 507
BlsI	GCNGC	2 cut(s)	328, 508
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	5 cut(s)	106, 195, 393, 585, 654
BpiI	GAAGAC	1 cut(s)	651
BplI	GAGNNNNNCTC	6 cut(s)	225, 257, 348, 380, 612, 644
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	186, 568, 619
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	5 cut(s)	54, 388, 541, 643, 651
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	3 cut(s)	130, 198, 310
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	353, 377
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	130, 198, 310
Bsp143I	GATC	4 cut(s)	271, 358, 484, 523
BspACI	CCGC	2 cut(s)	324, 507
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	5 cut(s)	53, 387, 540, 642, 652
BspLI	GGNNCC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	531
BspQI	GCTCTTC	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	4 cut(s)	271, 358, 484, 523
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	70, 403
Bst6I	CTCTTC	2 cut(s)	219, 269
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	163, 250
BstDEI	CTNAG	6 cut(s)	40, 344, 374, 527, 629, 660
BstF5I	GGATG	3 cut(s)	186, 568, 619
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	4 cut(s)	274, 361, 487, 526
BstMAI	GTCTC	2 cut(s)	353, 377
BstMBI	GATC	4 cut(s)	271, 358, 484, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 326, 464, 549
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	2 cut(s)	358, 523
BstYI	RGATCY	2 cut(s)	358, 523
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	186, 568, 619
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	66, 399, 538
Cac8I	GCNNGC	2 cut(s)	163, 250
CfoI	GCGC	1 cut(s)	533
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	259, 653
CviJI	RGCY	7 cut(s)	47, 60, 237, 252, 302, 336, 458
CviKI_1	RGCY	7 cut(s)	47, 60, 237, 252, 302, 336, 458
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	6 cut(s)	40, 344, 374, 527, 629, 660
DpnI	GATC	4 cut(s)	273, 360, 486, 525
DpnII	GATC	4 cut(s)	271, 358, 484, 523
Eam1104I	CTCTTC	2 cut(s)	219, 269
EarI	CTCTTC	2 cut(s)	219, 269
Eco130I	CCWWGG	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	2 cut(s)	262, 656
FaiI	YATR	5 cut(s)	260, 353, 455, 640, 654
FalI	AAGNNNNNCTT	4 cut(s)	408, 440, 471, 503
FatI	CATG	2 cut(s)	258, 652
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	327, 507
FokI	GGATG	3 cut(s)	173, 575, 626
Fsp4HI	GCNGC	2 cut(s)	327, 507
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	327, 507
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	262, 656
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	633, 656
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	274, 466
Hpy166II	GTNNAC	2 cut(s)	412, 430
Hpy188I	TCNGA	4 cut(s)	43, 377, 632, 661
Hpy188III	TCNNGA	1 cut(s)	580
Hpy8I	GTNNAC	2 cut(s)	412, 430
HpyAV	CCTTC	4 cut(s)	248, 400, 481, 526
HpyCH4III	ACNGT	2 cut(s)	70, 403
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 326, 464, 549
HpyF3I	CTNAG	6 cut(s)	40, 344, 374, 527, 629, 660
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	262, 656
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	271, 358, 484, 523
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	52, 201
LpnPI	CCDG	7 cut(s)	147, 176, 203, 262, 288, 343, 592
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	5 cut(s)	106, 195, 393, 585, 654
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	3, 280
MalI	GATC	4 cut(s)	273, 360, 486, 525
MboI	GATC	4 cut(s)	271, 358, 484, 523
MboII	GAAGA	5 cut(s)	236, 256, 353, 479, 656
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	2 cut(s)	358, 523
MhlI	GDGCHC	3 cut(s)	130, 198, 310
MluCI	AATT	4 cut(s)	172, 367, 439, 690
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	196, 220, 227, 614, 673, 694
MseI	TTAA	6 cut(s)	81, 140, 171, 255, 312, 492
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	125, 326, 464, 549
NdeII	GATC	4 cut(s)	271, 358, 484, 523
NlaIII	CATG	2 cut(s)	262, 656
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	3, 280
NspI	RCATGY	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	633, 656
PkrI	GCNGC	2 cut(s)	328, 508
PshBI	ATTAAT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	358, 523
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	6 cut(s)	81, 140, 171, 255, 312, 492
SatI	GCNGC	2 cut(s)	327, 507
Sau3AI	GATC	4 cut(s)	271, 358, 484, 523
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	3 cut(s)	130, 198, 310
SetI	ASST	6 cut(s)	49, 207, 231, 282, 460, 473
SfaNI	GCATC	5 cut(s)	106, 195, 393, 585, 654
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	172, 367, 439, 690
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	324, 507
SspI	AATATT	2 cut(s)	29, 169
SspMI	CTAG	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	70, 403
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	172, 367, 439, 690
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	633, 656
Tru1I	TTAA	6 cut(s)	81, 140, 171, 255, 312, 492
Tru9I	TTAA	6 cut(s)	81, 140, 171, 255, 312, 492
TscAI	CASTG	3 cut(s)	73, 406, 545
TseFI	GTSAC	2 cut(s)	3, 280
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	3, 280
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	3 cut(s)	73, 406, 545
VspI	ATTAAT	1 cut(s)	171
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.