Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Forward (+)

22771975 .. 22772792

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTTCTCAATGATCTTGAACAAACCAGCGGCCCTTTCTTTTCCGGCCTTGACATGCTCTTCCTTGATCTCAACCTCACCCTTGCAATGGTAGTGGCTTGTGCTCTTGATGATGGAGCCTCCACTTGGAGATGCCACCAACTTGATCTCGTACGAGATTTTCTCAACCTTGTCTCCAATAGCATCACCTTCAATGATGCTGTAGTTGTAAACAAAGTTGTCTTTGTCAAGTCCATCAATCTGGTGTTTCACGTAGCTGTACTCGCTTCCTTCACCGAGGTGAATCTTCTTGATGGTTCCTACACCTCCATCACCTTGAACGATTTCGGCACTCTTCACAGCCTGTGGCGCAATCTTGGGGATGAGGTTATCAGCATCAAGAACAAAGGCCTTGTAGAGTCTTGGTGGTGGGATGACAGAGGTGAACTCGGTTTCATAAGTGAACACACCCATGATGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

4.41

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	153, 261
AfiI	CCNNNNNNNGG	3 cut(s)	88, 126, 457
AgsI	TTSAA	3 cut(s)	20, 193, 319
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	3 cut(s)	31, 46, 388
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	6 cut(s)	70, 178, 265, 292, 304, 434
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	4 cut(s)	107, 242, 287, 317
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	118, 298
BmsI	GCATC	4 cut(s)	122, 187, 192, 384
BplI	GAGNNNNNCTC	4 cut(s)	147, 179, 411, 443
BsaAI	YACGTR	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 126, 457
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	367, 418
BseLI	CCNNNNNNNGG	3 cut(s)	88, 126, 457
BseMI	GCAATG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	33, 48, 390
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	45
BsiWI	CGTACG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	88, 126, 457
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	33, 48, 390
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	13, 67, 145
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	3 cut(s)	33, 48, 390
BspLI	GGNNCC	2 cut(s)	118, 298
BspQI	GCTCTTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	13, 67, 145
Bst6I	CTCTTC	2 cut(s)	65, 339
BstBAI	YACGTR	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	367, 418
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	3 cut(s)	16, 70, 148
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	13, 67, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 348
BstNSI	RCATGY	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	33, 48, 390
BtsCI	GGATG	2 cut(s)	367, 418
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	152, 260
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	2 cut(s)	55, 452
CviJI	RGCY	7 cut(s)	33, 48, 98, 119, 257, 342, 390
CviKI_1	RGCY	7 cut(s)	33, 48, 98, 119, 257, 342, 390
CviQI	GTAC	2 cut(s)	152, 260
DpnI	GATC	3 cut(s)	15, 69, 147
DpnII	GATC	3 cut(s)	13, 67, 145
Eam1104I	CTCTTC	2 cut(s)	65, 339
EarI	CTCTTC	2 cut(s)	65, 339
Eco147I	AGGCCT	1 cut(s)	390
FaeI	CATG	2 cut(s)	58, 455
FaiI	YATR	3 cut(s)	56, 437, 453
FatI	CATG	2 cut(s)	54, 451
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	2 cut(s)	374, 425
Fsp4HI	GCNGC	1 cut(s)	31
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	33, 48, 390
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	58, 455
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	283, 398
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	6 cut(s)	70, 178, 265, 292, 304, 434
Hpy166II	GTNNAC	3 cut(s)	211, 425, 443
Hpy188III	TCNNGA	4 cut(s)	17, 107, 290, 379
Hpy8I	GTNNAC	3 cut(s)	211, 425, 443
HpyAV	CCTTC	2 cut(s)	199, 280
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 348
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	58, 455
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	13, 67, 145
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	40, 58, 227, 356
LweI	GCATC	4 cut(s)	122, 187, 192, 384
MaeII	ACGT	1 cut(s)	252
MalI	GATC	3 cut(s)	15, 69, 147
MboI	GATC	3 cut(s)	13, 67, 145
MboII	GAAGA	3 cut(s)	52, 278, 326
MhlI	GDGCHC	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	7 cut(s)	86, 130, 271, 316, 358, 413, 451
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	2 cut(s)	278, 450
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	263, 348
NdeII	GATC	3 cut(s)	13, 67, 145
NlaIII	CATG	2 cut(s)	58, 455
NlaIV	GGNNCC	2 cut(s)	118, 298
NspI	RCATGY	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	283
Pfl23II	CGTACG	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	253
PspLI	CGTACG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	118, 298
PspPI	GGNCC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	153, 261
RsaNI	GTAC	2 cut(s)	152, 260
RseI	CAYNNNNRTG	2 cut(s)	278, 450
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	3 cut(s)	13, 67, 145
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	4 cut(s)	122, 187, 192, 384
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	278, 450
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	424
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.