Rorug01G0468300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005741
Physical Location & Seq
Forward (+)
56086514 .. 56087548
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0468300.1

Sequence Viewer

Length: 444 bp
ATGAGCCTGAACCCCACATCCTCACCAACGGACCTGAACCCAGCCAAGAAGTCGAAGCCGAACAGCCCCGAGCTACCAGAATATGAACTTCCTGAGTGCCAGATAGATGCTGATGTTCTAAAACTCTCACCAGAAGAAAGGATGCGAAGGAGTTGGTTGGCCTTTGGCGAAGAATTGAAGAAAAATCCTCCTCCAAAGGGTGTCTTACCCGATGGACCAAAATTCGATCCTTCACAACCTTTACCAAAGGGATATGCATGGAGTTCTTACATCCCTGGGAGTGGAATTAAATCTTTTCCTGTTAGGATGCATTGCATTGGCTGTGGCCTGGCTGGAGATCACTGGACTGATGACTGCCCAAAAAAGGGTACTGAAGAGTTCAAGAGGAATTTCACCAGTATTGTCGAGAATTATCTTGATGAGACCGGGAAAAAGACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

6.73

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 2 cut(s) 221, 388
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 4 cut(s) 197, 281, 364, 365
AgsI TTSAA 2 cut(s) 178, 382
AjnI CCWGG 2 cut(s) 274, 327
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 159, 325
ApoI RAATTY 2 cut(s) 221, 388
AspS9I GGNCC 2 cut(s) 31, 215
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 15, 120, 385
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 31, 215
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 276, 329
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 416
Bme1390I CCNGG 3 cut(s) 276, 329, 427
Bme18I GGWCC 2 cut(s) 31, 215
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 31, 215
BmrFI CCNGG 3 cut(s) 276, 329, 427
BmsI GCATC 3 cut(s) 97, 132, 297
BpmI CTGGAG 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 274, 275
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 281, 364, 365
Bse1I ACTGG 2 cut(s) 347, 396
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 276, 329
BseDI CCNNGG 2 cut(s) 274, 275
BseGI GGATG 4 cut(s) 17, 147, 270, 312
BseLI CCNNNNNNNGG 4 cut(s) 197, 281, 364, 365
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 347, 396
BseRI GAGGAG 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 161, 327
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 426
BslI CCNNNNNNNGG 4 cut(s) 197, 281, 364, 365
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 161, 327
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 226, 337
BspANI GGCC 2 cut(s) 161, 327
BspCNI CTCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 347, 396
BssECI CCNNGG 2 cut(s) 274, 275
BssMI GATC 2 cut(s) 226, 337
Bst2UI CCWGG 2 cut(s) 276, 329
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 4 cut(s) 17, 147, 270, 312
BstKTI GATC 2 cut(s) 229, 340
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 2 cut(s) 226, 337
BstNI CCWGG 2 cut(s) 276, 329
BstSCI CCNGG 3 cut(s) 274, 327, 425
BsuRI GGCC 2 cut(s) 161, 327
BtsCI GGATG 4 cut(s) 17, 147, 270, 312
BtsIMutI CAGTG 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 31, 215
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 258
CviJI RGCY 9 cut(s) 6, 44, 58, 66, 73, 161, 321, 327, 332
CviKI_1 RGCY 9 cut(s) 6, 44, 58, 66, 73, 161, 321, 327, 332
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 228, 339
DpnII GATC 2 cut(s) 226, 337
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 31, 215
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 274, 327
EcoT22I ATGCAT 2 cut(s) 259, 312
FaeI CATG 1 cut(s) 261
FaiI YATR 3 cut(s) 84, 255, 259
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 257
FokI GGATG 4 cut(s) 4, 154, 257, 319
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 161, 327
HapII CCGG 1 cut(s) 426
Hin1II CATG 1 cut(s) 261
HpaII CCGG 1 cut(s) 426
HphI GGTGA 3 cut(s) 15, 120, 385
Hpy188III TCNNGA 4 cut(s) 92, 382, 406, 416
HpyAV CCTTC 2 cut(s) 141, 240
HpyCH4V TGCA 3 cut(s) 257, 310, 315
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 226, 337
LweI GCATC 3 cut(s) 97, 132, 297
MalI GATC 2 cut(s) 228, 339
MboI GATC 2 cut(s) 226, 337
MboII GAAGA 4 cut(s) 146, 182, 190, 386
MluCI AATT 5 cut(s) 173, 221, 285, 388, 409
MnlI CCTC 4 cut(s) 31, 198, 201, 378
Mph1103I ATGCAT 2 cut(s) 259, 312
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 3 cut(s) 276, 329, 427
MvaI CCWGG 2 cut(s) 276, 329
NciI CCSGG 1 cut(s) 427
NdeII GATC 2 cut(s) 226, 337
NlaIII CATG 1 cut(s) 261
NsiI ATGCAT 2 cut(s) 259, 312
PasI CCCWGGG 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 274, 327
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 274, 327
PspPI GGNCC 2 cut(s) 31, 215
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 2 cut(s) 226, 337
Sau96I GGNCC 2 cut(s) 31, 215
ScrFI CCNGG 3 cut(s) 276, 329, 427
SetI ASST 3 cut(s) 36, 75, 241
SfaNI GCATC 3 cut(s) 97, 132, 297
SinI GGWCC 2 cut(s) 31, 215
Sse9I AATT 5 cut(s) 173, 221, 285, 388, 409
StyD4I CCNGG 3 cut(s) 274, 327, 425
TaqI TCGA 3 cut(s) 53, 225, 405
TasI AATT 5 cut(s) 173, 221, 285, 388, 409
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 31, 215
XapI RAATTY 2 cut(s) 221, 388
Zsp2I ATGCAT 2 cut(s) 259, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.