Rroxscaffold_5G00354660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005741
Physical Location & Seq
Reverse (-)
33126722 .. 33127441
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354660.1

Sequence Viewer

Length: 414 bp
ATGCTCTTCCTTGATCTCCACATCACCCTTTGCGTGGTAGTTACTGGTGCTCTTGATGACAGAGCCTCCATCGGAAGATGCTACCAACTTAGTCTCATAGGAGATCTTCTCGATTTTGTCAGATATAGCGTCTCCCTCAATCATGCTGTATTTGTATACAAAGTTGTCTTTATCAATTCCGTCAATTTGATGCTTCACATAGCTGTATTCACTTCCTTCACCGAGGTTGATCTTCTTGATGGTGCCAACTCCTCCATCACCTTCAAGAATCTCGGCACTCTTAACTGCTTGGGGAGCAATCTTGGGGATGAGGTTGTCGGCATCAAGGACAAAGGCCTTGAACAGCCTAGCTGGTGGGATGACAGAGGTGAACTCAGATTCATAAGTGAAGACACCCATGATGACTTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.23

Weight (kDa)

4.5

Isoelectric Point (pI)

15.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 406
AgsI TTSAA 2 cut(s) 265, 341
AluBI AGCT 2 cut(s) 203, 351
AluI AGCT 2 cut(s) 203, 351
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 2 cut(s) 98, 136
AoxI GGCC 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 16, 211, 250, 380
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 3 cut(s) 77, 233, 263
BcoDI GTCTC 2 cut(s) 98, 136
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 406
BglII AGATCT 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 3 cut(s) 68, 180, 330
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 4 cut(s) 93, 125, 357, 389
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 313, 364
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 241
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 98, 136
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 13, 103, 229
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 406
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 13, 103, 229
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 89, 374
BstF5I GGATG 2 cut(s) 313, 364
BstKTI GATC 3 cut(s) 16, 106, 232
BstMAI GTCTC 2 cut(s) 98, 136
BstMBI GATC 3 cut(s) 13, 103, 229
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 2 cut(s) 313, 364
CseI GACGC 1 cut(s) 118
CviAII CATG 2 cut(s) 143, 398
CviJI RGCY 5 cut(s) 65, 203, 336, 346, 351
CviKI_1 RGCY 5 cut(s) 65, 203, 336, 346, 351
DdeI CTNAG 2 cut(s) 89, 374
DpnI GATC 3 cut(s) 15, 105, 231
DpnII GATC 3 cut(s) 13, 103, 229
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 2 cut(s) 146, 401
FaiI YATR 7 cut(s) 98, 126, 144, 157, 200, 383, 399
FatI CATG 2 cut(s) 142, 397
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 320, 371
FspBI CTAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 336
HgaI GACGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 146, 401
HinfI GANTC 2 cut(s) 268, 378
HphI GGTGA 4 cut(s) 16, 211, 250, 380
Hpy166II GTNNAC 2 cut(s) 157, 371
Hpy188I TCNGA 3 cut(s) 74, 122, 377
Hpy188III TCNNGA 4 cut(s) 53, 110, 236, 265
Hpy8I GTNNAC 2 cut(s) 157, 371
HpyAV CCTTC 2 cut(s) 226, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 2 cut(s) 89, 374
Hsp92II CATG 2 cut(s) 146, 401
Kzo9I GATC 3 cut(s) 13, 103, 229
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 2 cut(s) 30, 337
LweI GCATC 3 cut(s) 68, 180, 330
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 15, 105, 231
MboI GATC 3 cut(s) 13, 103, 229
MboII GAAGA 4 cut(s) 87, 98, 224, 401
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 175, 184
MnlI CCTC 6 cut(s) 76, 146, 217, 262, 304, 359
MseI TTAA 3 cut(s) 282, 407, 412
MspCI CTTAAG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 3 cut(s) 13, 103, 229
NlaIII CATG 2 cut(s) 146, 401
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 252
PceI AGGCCT 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 268, 378
PspN4I GGNNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 282, 407, 412
Sau3AI GATC 3 cut(s) 13, 103, 229
SduI GDGCHC 1 cut(s) 52
SetI ASST 6 cut(s) 205, 228, 263, 315, 353, 370
SfaNI GCATC 3 cut(s) 68, 180, 330
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 2 cut(s) 175, 184
SseBI AGGCCT 1 cut(s) 336
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 336
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 175, 184
TfiI GAWTC 2 cut(s) 268, 378
Tru1I TTAA 3 cut(s) 282, 407, 412
Tru9I TTAA 3 cut(s) 282, 407, 412
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 169
Vha464I CTTAAG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.