RLG00000007519

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005741
Physical Location & Seq
Reverse (-)
17770459 .. 17771733
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007519

Sequence Viewer

Length: 396 bp
ATGGTGGTGGTTGGTGCTCTTGATGATGGAGCCTCCACTCGGACATGCAACCAATTTAATCTCGTAAGAGATTTTCTCAACTTTGTCTCCGATAGCATCCCTTTCGACTATGCTGTAGTTGTAAACAAAGTTGTCTTTGTCAAGTCCATCAATCTGATGCTTCATGATCCCCATCCAGTTTCCGCGTTTGATTGCCTATTGGCAGGATCAGGATGTAACGCTAGCACAAAGGCGGTGACATGGTGGAGGAAGAAGCTGAACAAGGCTAGGGAGCTTACGGAGCTTTATGGAGGGCCAAAGTGGAAAAACTTGGTTAGGAAGATTGGTGCATATTGCAGTGAAGATATAGATGGGGAGAATCCAGTTGCTAATTTTTTGCAGCTCCTTCGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.56

Weight (kDa)

8.38

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 2 cut(s) 183, 233
AclWI GGATC 2 cut(s) 161, 214
AfiI CCNNNNNNNGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 256, 274, 283, 382
AluI AGCT 4 cut(s) 256, 274, 283, 382
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 161, 214
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 391
BccI CCATC 4 cut(s) 20, 155, 180, 344
BcgI CGANNNNNNTGC 3 cut(s) 85, 119, 368
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 222, 267
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 2 cut(s) 105, 147
BmtI GCTAGC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BsaBI GATNNNNATC 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 176, 362
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 3 cut(s) 96, 172, 218
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 176, 362
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 166, 206
BspACI CCGC 2 cut(s) 183, 233
BspANI GGCC 1 cut(s) 295
BspFNI CGCG 1 cut(s) 185
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 161, 214
BsrI ACTGG 2 cut(s) 176, 362
BssMI GATC 2 cut(s) 166, 206
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 3 cut(s) 96, 172, 218
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 2 cut(s) 169, 209
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 166, 206
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 3 cut(s) 96, 172, 218
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 293
CviAII CATG 3 cut(s) 45, 164, 240
CviJI RGCY 7 cut(s) 32, 256, 266, 274, 283, 295, 382
CviKI_1 RGCY 7 cut(s) 32, 256, 266, 274, 283, 295, 382
DpnI GATC 2 cut(s) 168, 208
DpnII GATC 2 cut(s) 166, 206
FaeI CATG 3 cut(s) 48, 167, 243
FaiI YATR 7 cut(s) 46, 111, 165, 241, 288, 331, 347
FatI CATG 3 cut(s) 44, 163, 239
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 3 cut(s) 83, 159, 225
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 2 cut(s) 222, 267
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 3 cut(s) 48, 167, 243
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 42, 91, 156
Hpy188III TCNNGA 3 cut(s) 20, 164, 210
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 395
HpyCH4V TGCA 4 cut(s) 48, 329, 336, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
Hsp92II CATG 3 cut(s) 48, 167, 243
Kzo9I GATC 2 cut(s) 166, 206
LmnI GCTCC 4 cut(s) 29, 271, 280, 387
LpnPI CCDG 4 cut(s) 189, 189, 195, 375
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 105, 147
MaeI CTAG 2 cut(s) 222, 267
MaeIII GTNAC 2 cut(s) 215, 235
MalI GATC 2 cut(s) 168, 208
MboI GATC 2 cut(s) 166, 206
MboII GAAGA 3 cut(s) 262, 331, 353
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 53, 370
MnlI CCTC 3 cut(s) 43, 240, 284
MseI TTAA 1 cut(s) 57
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 2 cut(s) 166, 206
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 48, 167, 243
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 48
PagI TCATGA 1 cut(s) 163
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 166, 206
Sau96I GGNCC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 19
SetI ASST 4 cut(s) 258, 276, 285, 384
SfaNI GCATC 2 cut(s) 105, 147
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 53, 370
SsiI CCGC 2 cut(s) 183, 233
SspMI CTAG 2 cut(s) 222, 267
TaqI TCGA 2 cut(s) 105, 388
TasI AATT 2 cut(s) 53, 370
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 343
XceI RCATGY 1 cut(s) 48
XspI CTAG 2 cut(s) 222, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.