Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002376.1

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Reverse (-)

13256 .. 13789

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002376.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgagcgaccacccttcaatgctcatgagggacagttatgaccatgatcaaagagaagtaggcatcgatggctatgaagaggatggcccggcttgttatcatggctgtttcggggttttcaggtttccttggaagcaaagcagcagcgagaatgaaggtaagcatctattgggaggatcaggatgtaactttagcaccaaggaggtgacatggtggaggaagaagctgaacaaggctagggagtttacggaggtttatggagggccaaagtggaagaacttggttaggaagattggtgcatattgcaggcggtgtaggaagcggaaagttagattgtgcgagaaaaagaagccaaagaataggttccagtatgatatgaatagctataatctcaattttgataacggcagtgaaggtagagatggggagaatccggttgctaatttctcagcaaggtttgcagctccttcgagtttggtttcgcagcagggtccggatgttggtgtacatgcttctgaagaatctgaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.21

Weight (kDa)

8.86

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	2 cut(s)	310, 322
AclWI	GGATC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	3 cut(s)	226, 384, 464
AluI	AGCT	3 cut(s)	226, 384, 464
AlwI	GGATC	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	2 cut(s)	85, 263
ApeKI	GCWGC	4 cut(s)	141, 144, 461, 484
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	86, 263, 491
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	491
BbvI	GCAGC	4 cut(s)	153, 156, 473, 496
BccI	CCATC	3 cut(s)	62, 77, 416
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	4 cut(s)	142, 145, 462, 485
BlsI	GCNGC	4 cut(s)	143, 146, 463, 486
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	86, 263, 491
BmiI	GGNNCC	2 cut(s)	365, 492
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	72, 172
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	128, 198
BsaWI	WCCGGW	2 cut(s)	433, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	493
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	128, 198
BseGI	GGATG	3 cut(s)	88, 188, 502
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	4 cut(s)	153, 156, 473, 496
BshFI	GGCC	2 cut(s)	87, 265
BshVI	ATCGAT	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	89, 434, 494
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	87, 265
Bsp13I	TCCGGA	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	46, 176
BspACI	CCGC	2 cut(s)	310, 322
BspANI	GGCC	2 cut(s)	87, 265
BspCNI	CTCAG	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	365, 492
BspPI	GGATC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	128, 198
BssMI	GATC	2 cut(s)	46, 176
BssT1I	CCWWGG	2 cut(s)	128, 198
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	88, 188, 502
BstKTI	GATC	2 cut(s)	49, 179
BstMBI	GATC	2 cut(s)	46, 176
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 458
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	153, 156, 473, 496
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	87, 265
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	88, 188, 502
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	86, 263, 491
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	5 cut(s)	25, 44, 101, 210, 509
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	2 cut(s)	48, 178
DpnII	GATC	2 cut(s)	46, 176
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	128, 198
Eco47I	GGWCC	1 cut(s)	491
EcoT14I	CCWWGG	2 cut(s)	128, 198
ErhI	CCWWGG	2 cut(s)	128, 198
FaeI	CATG	5 cut(s)	28, 47, 104, 213, 512
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	24, 43, 100, 209, 508
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	142, 145, 462, 485
FokI	GGATG	3 cut(s)	95, 195, 509
Fsp4HI	GCNGC	4 cut(s)	142, 145, 462, 485
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	4 cut(s)	142, 145, 462, 485
HaeIII	GGCC	2 cut(s)	87, 265
HapII	CCGG	3 cut(s)	89, 434, 494
Hin1II	CATG	5 cut(s)	28, 47, 104, 213, 512
HinfI	GANTC	2 cut(s)	430, 521
HpaII	CCGG	3 cut(s)	89, 434, 494
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	246, 506
Hpy188I	TCNGA	2 cut(s)	517, 526
Hpy188III	TCNNGA	3 cut(s)	25, 180, 494
Hpy8I	GTNNAC	2 cut(s)	246, 506
HpyAV	CCTTC	5 cut(s)	24, 149, 407, 477, 521
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	299, 306, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 458
HpyF3I	CTNAG	1 cut(s)	448
Hsp92II	CATG	5 cut(s)	28, 47, 104, 213, 512
Kpn2I	TCCGGA	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 176
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	8 cut(s)	102, 106, 165, 292, 380, 447, 473, 507
Lsp1109I	GCAGC	4 cut(s)	153, 156, 473, 496
LweI	GCATC	2 cut(s)	72, 172
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	185, 205
MalI	GATC	2 cut(s)	48, 178
MboI	GATC	2 cut(s)	46, 176
MboII	GAAGA	5 cut(s)	89, 232, 286, 301, 530
MluCI	AATT	2 cut(s)	394, 442
MnlI	CCTC	7 cut(s)	21, 73, 167, 196, 210, 244, 254
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	362
MspI	CCGG	3 cut(s)	89, 434, 494
MspR9I	CCNGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	69, 458
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	2 cut(s)	46, 176
NlaIII	CATG	5 cut(s)	28, 47, 104, 213, 512
NlaIV	GGNNCC	2 cut(s)	365, 492
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	512
PagI	TCATGA	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	430, 521
PkrI	GCNGC	4 cut(s)	143, 146, 463, 486
PspN4I	GGNNCC	2 cut(s)	365, 492
PspPI	GGNCC	3 cut(s)	86, 263, 491
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SatI	GCNGC	4 cut(s)	142, 145, 462, 485
Sau3AI	GATC	2 cut(s)	46, 176
Sau96I	GGNCC	3 cut(s)	86, 263, 491
ScrFI	CCNGG	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	72, 172
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	2 cut(s)	394, 442
SsiI	CCGC	2 cut(s)	310, 322
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	128, 198
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	66, 470
TasI	AATT	2 cut(s)	394, 442
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	2 cut(s)	430, 521
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	141, 144, 461, 484
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	90, 168, 392
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	491
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.