Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Reverse (-)

911761 .. 912201

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATGCATACGAAGAAGAAGCCCCGGCTTGTTGTCATGGCTGTTTCGGGGTTTTCAAGTTTCCATGGAAGCAAAGCAGCAGCGAGAATGAAGGCAAGCTTCTGTTGGGAGGATGTAACAGTAGCACTAAGGAGGTGACATGGTGGAGGAAGGAGCTGAACAAGGCTAGGGAGTCTACGGTGGTTTATGGAGGGCCAAAGTGGAAGAATTTGGTTAGGAAGATTGGTGCATATTGCAGGGGGTGTAGGAAGCAAAAAGTGAGGTTGTGGAAGAAACAGAAGCCGAAGAATAGGTTCCAGTATGATATGGATAGCTATAATCTCAATTTTGATAATGGCAGTGATGGTAGAGATGGGGAGAATCCGGTTGCTGATTTTGCAGCAAGGTTTGCAGCTCCTTCGAGTGTTATTTCTCAGCAGGGTCCGGTTGATCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

9.15

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	4 cut(s)	100, 157, 315, 395
AluI	AGCT	4 cut(s)	100, 157, 315, 395
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	78, 81, 380, 392
ApoI	RAATTY	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	194, 422
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	90, 93, 392, 404
BccI	CCATC	2 cut(s)	338, 347
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	79, 82, 381, 393
BlsI	GCNGC	4 cut(s)	80, 83, 382, 394
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	194, 422
BmiI	GGNNCC	2 cut(s)	296, 423
BmrFI	CCNGG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	24, 65
BsaWI	WCCGGW	2 cut(s)	364, 424
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	24, 65
BseGI	GGATG	2 cut(s)	10, 119
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	4 cut(s)	90, 93, 392, 404
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	26, 365, 425
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	65
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	296, 423
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	24, 65
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	122, 181
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	129, 414
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	10, 119
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 389
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	90, 93, 392, 404
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	10, 119
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	194, 422
CviAII	CATG	3 cut(s)	38, 66, 141
DdeI	CTNAG	2 cut(s)	129, 414
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	41, 69, 144
FaiI	YATR	9 cut(s)	10, 39, 67, 142, 189, 232, 303, 308, 318
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	3 cut(s)	37, 65, 140
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	79, 82, 381, 393
FokI	GGATG	2 cut(s)	17, 126
Fsp4HI	GCNGC	4 cut(s)	79, 82, 381, 393
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	79, 82, 381, 393
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	3 cut(s)	26, 365, 425
Hin1II	CATG	3 cut(s)	41, 69, 144
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	173, 361
HpaII	CCGG	3 cut(s)	26, 365, 425
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	3 cut(s)	86, 145, 408
HpyCH4III	ACNGT	2 cut(s)	122, 181
HpyCH4V	TGCA	5 cut(s)	8, 230, 237, 380, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 389
HpyF3I	CTNAG	2 cut(s)	129, 414
Hsp92II	CATG	3 cut(s)	41, 69, 144
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	154, 400
LpnPI	CCDG	5 cut(s)	39, 223, 311, 378, 404
Lsp1109I	GCAGC	4 cut(s)	90, 93, 392, 404
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	116, 136
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	6 cut(s)	26, 29, 217, 232, 283, 298
MluCI	AATT	2 cut(s)	208, 325
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	104, 127, 141, 185, 255
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	293
MspI	CCGG	3 cut(s)	26, 365, 425
MspR9I	CCNGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	377, 389
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	41, 69, 144
NlaIV	GGNNCC	2 cut(s)	296, 423
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	80, 83, 382, 394
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	296, 423
PspPI	GGNCC	2 cut(s)	194, 422
SatI	GCNGC	4 cut(s)	79, 82, 381, 393
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	2 cut(s)	194, 422
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	8 cut(s)	102, 138, 159, 266, 296, 317, 389, 397
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	2 cut(s)	208, 325
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	122, 181
TaqI	TCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	208, 325
TfiI	GAWTC	1 cut(s)	361
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	4 cut(s)	78, 81, 380, 392
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.