Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005741

Physical Location & Seq

Genomic Coordinates Forward (+)

12624052 .. 12624741

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1160800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCATATAATTTAGTTGTAGGCGTCTTGGTGCTCCAAGAGGTAGTTCTCAATCAACTTGAAGAGGTGGGAGGCCTTCTCTTTGCCAGCCTTAACATGCTCTTCTTTGATCTCAACATCACCCTTGGTGTGGTAGTGGCTGGTGCTCTTGATGACGGAACCGCTGCCAGAAGCGACCAACTTAGTCTCATAAGAGATCTTCTCAATTGTCTCAGAGATAGCATCTCCTTCAATCACACTGTACTTGTAGACAAAGTTGATCTCAGCGCTCTTCACTGCCTGTGGTGCAATTTTGGGGATGAGGTTGTCAGCATCAAGAACAAATGCATTGAACAACCTAGCAGGGGGGATGACGGAGGTGAACTCGGATTCATATGTGAAAACACCCATGATTCTGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.62

Weight (kDa)

4.31

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25240
fragaria_vesca	FvH4_1g01721 FvH4_4g18840 FvH4_4g19061
malus_domestica	MD13G1160500.v1.1 MD13G1160800.v1.1
prunus_persica	Prupe.7G254800_v2.0.a1
pyrus_communis	pycom08g13030 pycom08g13040 pycom08g13070 pycom08g13080 pycom08g13100 pycom13g13670 pycom13g13690
rosa_chinensis	RchiOBHm_Chr2g0086671
rosa_laevigata	RLG00000007519 RLG00000015772
rosa_multiflora	Rmu_sc0002376.1_g000006
rosa_roxburghii	Rroxscaffold_2G00154330 Rroxscaffold_5G00354660 Rroxscaffold_5G00365870 Rroxscaffold_5G00366060
rosa_rugosa	Rorug01G0468300 Rorug04G0193100
rosa_samantha	Rh2AG020300 Rh2BG020200 Rh2CG019800 Rh2DG020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	243
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	130, 344
AgsI	TTSAA	3 cut(s)	62, 232, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
Alw21I	GWGCWC	2 cut(s)	36, 148
Alw26I	GTCTC	2 cut(s)	191, 215
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	112, 371
Bbv12I	GWGCWC	2 cut(s)	36, 148
BbvI	GCAGC	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	191, 215
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	270
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	2 cut(s)	231, 321
BplI	GAGNNNNNCTC	6 cut(s)	63, 95, 186, 218, 348, 380
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 344
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	304, 355
BseLI	CCNNNNNNNGG	2 cut(s)	130, 344
BseMII	CTCAG	3 cut(s)	226, 277, 387
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	36, 148
BslI	CCNNNNNNNGG	2 cut(s)	130, 344
BsmAI	GTCTC	2 cut(s)	191, 215
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	36, 148
Bsp143I	GATC	3 cut(s)	109, 196, 259
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	3 cut(s)	225, 276, 388
BspLI	GGNNCC	1 cut(s)	160
BspQI	GCTCTTC	2 cut(s)	107, 276
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	109, 196, 259
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	3 cut(s)	57, 107, 276
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	182, 212, 263, 396
BstF5I	GGATG	2 cut(s)	304, 355
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	112, 199, 262
BstMAI	GTCTC	2 cut(s)	191, 215
BstMBI	GATC	3 cut(s)	109, 196, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	304, 355
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	237, 274
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	269
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	97, 389
CviJI	RGCY	3 cut(s)	75, 90, 140
CviKI_1	RGCY	3 cut(s)	75, 90, 140
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	4 cut(s)	182, 212, 263, 396
DpnI	GATC	3 cut(s)	111, 198, 261
DpnII	GATC	3 cut(s)	109, 196, 259
Eam1104I	CTCTTC	3 cut(s)	57, 107, 276
EarI	CTCTTC	3 cut(s)	57, 107, 276
Eco130I	CCWWGG	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	75
Eco47III	AGCGCT	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	100, 392
FaiI	YATR	7 cut(s)	7, 9, 98, 191, 374, 376, 390
FatI	CATG	2 cut(s)	96, 388
FauNDI	CATATG	1 cut(s)	374
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	311, 362
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	100, 392
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	369, 392
HphI	GGTGA	2 cut(s)	112, 371
Hpy166II	GTNNAC	2 cut(s)	250, 362
Hpy188I	TCNGA	3 cut(s)	215, 368, 397
Hpy188III	TCNNGA	2 cut(s)	149, 316
Hpy8I	GTNNAC	2 cut(s)	250, 362
HpyAV	CCTTC	2 cut(s)	86, 238
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	288, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	4 cut(s)	182, 212, 263, 396
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	100, 392
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	109, 196, 259
LguI	GCTCTTC	2 cut(s)	107, 276
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	100, 126, 181, 293, 328
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	231, 321
MaeI	CTAG	1 cut(s)	339
MalI	GATC	3 cut(s)	111, 198, 261
MboI	GATC	3 cut(s)	109, 196, 259
MboII	GAAGA	4 cut(s)	74, 94, 191, 263
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	36, 148
MluCI	AATT	3 cut(s)	10, 205, 289
MnlI	CCTC	5 cut(s)	34, 58, 65, 295, 350
Mph1103I	ATGCAT	1 cut(s)	329
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	3 cut(s)	109, 196, 259
NlaIII	CATG	2 cut(s)	100, 392
NlaIV	GGNNCC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	75
PciSI	GCTCTTC	2 cut(s)	107, 276
PfeI	GAWTC	2 cut(s)	369, 392
PkrI	GCNGC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SapI	GCTCTTC	2 cut(s)	107, 276
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	109, 196, 259
SduI	GDGCHC	2 cut(s)	36, 148
SetI	ASST	5 cut(s)	45, 69, 306, 340, 361
SfaNI	GCATC	2 cut(s)	231, 321
Sse9I	AATT	3 cut(s)	10, 205, 289
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	3 cut(s)	10, 205, 289
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	369, 392
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	244, 281
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	171, 369
TspRI	CASTG	2 cut(s)	244, 281
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.