AT5G37370

PRP38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002200
Physical Location & Seq
Reverse (-)
14812570 .. 14816628
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37370.6

Sequence Viewer

Length: 1182 bp
ATGGCGGAGATACAGTCAAATGGAAGGGCATATGAGTCATTATTGGAAAAGGTTCTTTCAATGAACATTCTTTCTTCTGACTATTTTAAAGAGCTCTATGGTTTAAAGACTTATCATGAGGTAATTGATGAAATCTACAACCAAGTTAATCATGTGGAGCCGTGGATGGGTGGGAATTGCCGTGGTCCTTCAACAGCGTATTGTCTTCTCTACAAATTCTTTACCATGAAACTTACAGTGAAGCAGATGCATGGACTGTTAAAGCACACAGATTCTCCTTATATTAGAGCGGTTGGATTCCTATATTTAAGATATGTTGCAGATGCAAAGACGTTGTGGACATGGTATGAACCATACATTAAAGATGATGAGGAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGTACTACTTTGATACTTTGTTTCCTCGTATACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAAACCTTCTGGTTCAACCGGAGACATGACCCGTGGCTCAGAAGACACTGCCCGTCGTCCACCATCAGTAAAAGCATCCCTCTCTGTTTCATTTGGTCAGCGTGCACCTCATCGTGCTTCCACCAGAGGCTCTTCTCCTGTTCGCCGTCCTCCACCGACTGGTTATGACAGAAATGGAGGCGATGAAGTACAACAGCGGTCCCCACGTAGAAGCCAGAGCCGAGACTATTATTCTGACAGAGACTCAGATAGACAACGGGAAAGAGAGAGGGAGAAAGACCGCGAAAGAGAGAGGGGGAGGGATAGATACAGAGAAAGGGAAAGGGATTATGGTAATGATAGGAGATCAAGGCGTGACTATGATAGTAGAAGCAGGCGCAATGATTATGAGGACGACAGAAGTAGACATGACCGGAGAAGCAGGAGCAGAAGCAGAAGTAGGAGCAGGAGTGTGCAGATTGAGCGTGAACCGACTCCTAAAAGAGATAGTAGCAACAAAGAGAAATCGGCGGTGACAGTGAACAGCAATCTCGCAAAGCTAAAAGATTTGTATGGAGACGCAAGTAGTCAGAAAAGGGATGAAGGATTTGGAACAAGGAAAGATTCAAGTTCAGAAGAAGTGATAAAGCTTGGTGGTTCCTCTTGGAGGTGA

Protein Analysis

393

Amino Acids

45.86

Weight (kDa)

9.72

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38_assoc PF12871 45 - 138 2.1e-12 Pre-mRNA-splicing factor 38-associated hydrophilic C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 290
AccI GTMKAC 2 cut(s) 472, 934
AccII CGCG 1 cut(s) 813
AciI CCGC 5 cut(s) 5, 290, 727, 811, 1040
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 2 cut(s) 215, 520
AfaI GTAC 3 cut(s) 423, 446, 720
AfiI CCNNNNNNNGG 3 cut(s) 167, 689, 1176
AgsI TTSAA 4 cut(s) 60, 192, 546, 1137
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 3 cut(s) 94, 1069, 1159
AluI AGCT 3 cut(s) 94, 1069, 1159
Alw21I GWGCWC 2 cut(s) 96, 637
Alw26I GTCTC 4 cut(s) 546, 747, 765, 1080
Alw44I GTGCAC 1 cut(s) 633
AlwI GGATC 1 cut(s) 394
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 2 cut(s) 215, 520
Asp700I GAANNNNTTC 1 cut(s) 51
AspLEI GCGC 2 cut(s) 492, 909
AspS9I GGNCC 2 cut(s) 185, 729
AsuHPI GGTGA 2 cut(s) 372, 1054
AvaII GGWCC 2 cut(s) 185, 729
BaeGI GKGCMC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 197, 579
Bbv12I GWGCWC 2 cut(s) 96, 637
BbvI GCAGC 1 cut(s) 420
BccI CCATC 2 cut(s) 160, 601
BceAI ACGGC 3 cut(s) 145, 165, 660
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 4 cut(s) 546, 747, 765, 1080
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 185, 729
BmgT120I GGNCC 2 cut(s) 185, 729
BmiI GGNNCC 3 cut(s) 159, 731, 1168
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 237, 313, 614
BpiI GAAGAC 2 cut(s) 197, 579
BpuEI CTTGAG 1 cut(s) 530
BsaAI YACGTR 2 cut(s) 425, 737
BsaJI CCNNGG 3 cut(s) 161, 181, 562
BsaWI WCCGGW 2 cut(s) 548, 942
BsaXI ACNNNNNCTCC 5 cut(s) 29, 259, 289, 964, 994
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 689, 1176
Bse1I ACTGG 1 cut(s) 694
Bse3DI GCAATG 1 cut(s) 916
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 161, 181, 562
BseGI GGATG 4 cut(s) 171, 405, 605, 1114
BseLI CCNNNNNNNGG 3 cut(s) 167, 689, 1176
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 2 cut(s) 582, 789
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 420
BsgI GTGCAG 1 cut(s) 1004
Bsh1236I CGCG 1 cut(s) 813
BsiHKAI GWGCWC 2 cut(s) 96, 637
BsiSI CCGG 2 cut(s) 549, 943
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 3 cut(s) 167, 689, 1176
BsmAI GTCTC 4 cut(s) 546, 747, 765, 1080
BsmBI CGTCTC 1 cut(s) 1080
BsmFI GGGAC 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 96, 637
Bsp143I GATC 2 cut(s) 386, 875
BspACI CCGC 5 cut(s) 5, 290, 727, 811, 1040
BspCNI CTCAG 2 cut(s) 581, 788
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 159, 731, 1168
BspPI GGATC 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 916
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 161, 181, 562
BssMI GATC 2 cut(s) 386, 875
BssNAI GTATAC 1 cut(s) 473
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 5 cut(s) 15, 238, 258, 444, 1048
Bst6I CTCTTC 1 cut(s) 667
BstBAI YACGTR 2 cut(s) 425, 737
BstC8I GCNNGC 2 cut(s) 633, 905
BstDEI CTNAG 2 cut(s) 568, 775
BstDSI CCRYGG 3 cut(s) 161, 181, 562
BstENI CCTNNNNNAGG 1 cut(s) 1174
BstF5I GGATG 4 cut(s) 171, 405, 605, 1114
BstFNI CGCG 1 cut(s) 813
BstHHI GCGC 2 cut(s) 492, 909
BstKTI GATC 2 cut(s) 389, 878
BstMAI GTCTC 4 cut(s) 546, 747, 765, 1080
BstMBI GATC 2 cut(s) 386, 875
BstMWI GCNNNNNNNGC 1 cut(s) 991
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 197, 579
BstZ17I GTATAC 1 cut(s) 473
BtgI CCRYGG 3 cut(s) 161, 181, 562
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 4 cut(s) 171, 405, 605, 1114
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 243, 576, 1053
Cac8I GCNNGC 2 cut(s) 633, 905
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 492, 909
Cfr13I GGNCC 2 cut(s) 185, 729
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 3 cut(s) 422, 445, 719
CviAII CATG 8 cut(s) 116, 152, 226, 251, 342, 487, 556, 938
CviJI RGCY 8 cut(s) 94, 160, 567, 660, 744, 750, 1069, 1159
CviKI_1 RGCY 8 cut(s) 94, 160, 567, 660, 744, 750, 1069, 1159
CviQI GTAC 3 cut(s) 422, 445, 719
DdeI CTNAG 2 cut(s) 568, 775
DpnI GATC 2 cut(s) 388, 877
DpnII GATC 2 cut(s) 386, 875
DraI TTTAAA 2 cut(s) 88, 105
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 185, 729
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 1174
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 1080
FaeI CATG 8 cut(s) 119, 155, 229, 254, 345, 490, 559, 941
FaqI GGGAC 1 cut(s) 715
FatI CATG 8 cut(s) 115, 151, 225, 250, 341, 486, 555, 937
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 2 cut(s) 472, 934
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 4 cut(s) 178, 412, 592, 1121
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 434
GlaI GCGC 2 cut(s) 491, 908
GluI GCNGC 1 cut(s) 434
HapII CCGG 2 cut(s) 549, 943
HgaI GACGC 1 cut(s) 1097
HhaI GCGC 2 cut(s) 492, 909
Hin1II CATG 8 cut(s) 119, 155, 229, 254, 345, 490, 559, 941
Hin6I GCGC 2 cut(s) 490, 907
HinP1I GCGC 2 cut(s) 490, 907
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 6 cut(s) 35, 272, 297, 773, 1003, 1133
HpaII CCGG 2 cut(s) 549, 943
HphI GGTGA 2 cut(s) 372, 1054
Hpy166II GTNNAC 7 cut(s) 339, 473, 590, 635, 935, 998, 1051
Hpy188I TCNGA 6 cut(s) 79, 571, 766, 778, 1101, 1144
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 7 cut(s) 339, 473, 590, 635, 935, 998, 1051
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 4 cut(s) 18, 198, 546, 1106
HpyCH4III ACNGT 5 cut(s) 15, 238, 258, 444, 1048
HpyCH4IV ACGT 3 cut(s) 332, 424, 736
HpyCH4V TGCA 5 cut(s) 250, 320, 326, 635, 985
HpyF10VI GCNNNNNNNGC 1 cut(s) 991
HpyF3I CTNAG 2 cut(s) 568, 775
HpySE526I ACGT 3 cut(s) 332, 424, 736
Hsp92II CATG 8 cut(s) 119, 155, 229, 254, 345, 490, 559, 941
HspAI GCGC 2 cut(s) 490, 907
Kzo9I GATC 2 cut(s) 386, 875
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 3 cut(s) 157, 954, 972
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 3 cut(s) 237, 313, 614
MaeII ACGT 3 cut(s) 332, 424, 736
MaeIII GTNAC 2 cut(s) 884, 1042
MalI GATC 2 cut(s) 388, 877
MbiI CCGCTC 1 cut(s) 290
MboI GATC 2 cut(s) 386, 875
MboII GAAGA 6 cut(s) 66, 197, 526, 584, 654, 1157
MhlI GDGCHC 2 cut(s) 96, 637
MluCI AATT 4 cut(s) 123, 175, 215, 520
MlyI GAGTC 3 cut(s) 44, 767, 997
MmeI TCCRAC 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 6 cut(s) 87, 104, 147, 260, 308, 360
MspA1I CMGCKG 1 cut(s) 727
MspI CCGG 2 cut(s) 549, 943
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 1 cut(s) 991
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 386, 875
NlaIII CATG 8 cut(s) 119, 155, 229, 254, 345, 490, 559, 941
NlaIV GGNNCC 3 cut(s) 159, 731, 1168
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 2 cut(s) 884, 1042
NsiI ATGCAT 1 cut(s) 252
PagI TCATGA 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 272, 297, 1133
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 3 cut(s) 43, 767, 997
PpsI GAGTC 3 cut(s) 43, 767, 997
Ppu21I YACGTR 2 cut(s) 425, 737
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 159, 731, 1168
PspPI GGNCC 2 cut(s) 185, 729
RsaI GTAC 3 cut(s) 423, 446, 720
RsaNI GTAC 3 cut(s) 422, 445, 719
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 6 cut(s) 87, 104, 147, 260, 308, 360
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 2 cut(s) 386, 875
Sau96I GGNCC 2 cut(s) 185, 729
SchI GAGTC 3 cut(s) 44, 767, 997
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 96, 637
SfaNI GCATC 3 cut(s) 237, 313, 614
SinI GGWCC 2 cut(s) 185, 729
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 4 cut(s) 123, 175, 215, 520
SsiI CCGC 5 cut(s) 5, 290, 727, 811, 1040
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 5 cut(s) 15, 238, 258, 444, 1048
TaiI ACGT 3 cut(s) 335, 427, 739
TasI AATT 4 cut(s) 123, 175, 215, 520
TatI WGTACW 2 cut(s) 444, 718
TfiI GAWTC 3 cut(s) 272, 297, 1133
Tru1I TTAA 6 cut(s) 87, 104, 147, 260, 308, 360
Tru9I TTAA 6 cut(s) 87, 104, 147, 260, 308, 360
TscAI CASTG 3 cut(s) 243, 583, 1053
TseFI GTSAC 2 cut(s) 884, 1042
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 884, 1042
TspDTI ATGAA 8 cut(s) 77, 144, 242, 363, 533, 609, 729, 1125
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 3 cut(s) 243, 583, 1053
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 2 cut(s) 185, 729
XagI CCTNNNNNAGG 1 cut(s) 1174
XapI RAATTY 2 cut(s) 215, 520
XmiI GTMKAC 2 cut(s) 472, 934
XmnI GAANNNNTTC 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.