Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

17223330 .. 17226693

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGGTACAGACATGCGGGAAACCAATTGACTCATTGCTCGAGAAGGTGCTTTGTATGAACATTCTATCTTCCGACTACTTCAAGGAGCTTTACCGGTTAAAGACGTACCACGAAGTCATTGATGAAATTTACAACCAAGTAGACCATGTCGAGCCGTGGATGACCGGGAATTGCCGCGGTCCGTCCACTGCCTTTTGTCTGCTGTACAAGTTCTTCACCATGAAGCTCACCGTTAAGCAAATGCACGGTCTTTTAAAGCACGAGGATTCGCCTTACATAAGAGCGGTGGGGTTCCTCTACTTGAGATATGCTGCAGACCCAAAGACTTTGTGGAATTGGGTTGAACCCTATATTAAAGATGATGAGGACATTATGCGGTGTAAGGCGGCCGCCTGGGCGGGCTTGGCGGATGTTGGGCGGTCTGGGCACGACCTGGGAAAAACTTATGTCGCGAGACTCACAACCTTCTTGTCTCCCCGAGTCTTCCCGTCTGCCTCTTTGTTTGCTAGAAGAGGAGTCGAATATGGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATTTTTGCAATTGTAGGGATGGGTGATGGCGATGGGTTGAATTCTCTCCTGGTTCCAATGGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

211

Amino Acids

23.79

Weight (kDa)

5.97

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	180, 455
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	129, 604
AfaI	GTAC	3 cut(s)	9, 110, 209
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	85, 347, 604
AjnI	CCWGG	3 cut(s)	395, 435, 612
AluBI	AGCT	2 cut(s)	91, 229
AluI	AGCT	2 cut(s)	91, 229
Alw26I	GTCTC	2 cut(s)	451, 480
Ama87I	CYCGRG	2 cut(s)	41, 480
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	129, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	211, 223, 599
AvaI	CYCGRG	2 cut(s)	41, 480
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	577, 584, 590
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	3 cut(s)	397, 437, 614
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	451, 480
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	398
BisI	GCNGC	4 cut(s)	178, 315, 390, 393
BlsI	GCNGC	4 cut(s)	179, 316, 391, 394
Bme1390I	CCNGG	4 cut(s)	169, 397, 437, 614
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	2 cut(s)	41, 480
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	296, 618
BmrFI	CCNGG	4 cut(s)	169, 397, 437, 614
BpiI	GAAGAC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	169
BsaJI	CCNNGG	4 cut(s)	158, 178, 396, 436
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	3 cut(s)	397, 437, 614
BseDI	CCNNGG	4 cut(s)	158, 178, 396, 436
BseGI	GGATG	3 cut(s)	168, 418, 588
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	432
BseX3I	CGGCCG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	2 cut(s)	180, 455
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	392
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	41, 480
BsiSI	CCGG	2 cut(s)	97, 168
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	451, 480
BsnI	GGCC	1 cut(s)	392
BsoBI	CYCGRG	2 cut(s)	41, 480
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	207
Bsp68I	TCGCGA	1 cut(s)	455
BspANI	GGCC	1 cut(s)	392
BspFNI	CGCG	2 cut(s)	180, 455
BspLI	GGNNCC	2 cut(s)	296, 618
BspMAI	CTGCAG	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	4 cut(s)	158, 178, 396, 436
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	397, 437, 614
Bst4CI	ACNGT	2 cut(s)	235, 251
Bst6I	CTCTTC	1 cut(s)	508
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	403
BstDSI	CCRYGG	2 cut(s)	158, 178
BstF5I	GGATG	3 cut(s)	168, 418, 588
BstFNI	CGCG	2 cut(s)	180, 455
BstMAI	GTCTC	2 cut(s)	451, 480
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 407, 427
BstNI	CCWGG	3 cut(s)	397, 437, 614
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	4 cut(s)	167, 395, 435, 612
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	2 cut(s)	180, 455
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	2 cut(s)	158, 178
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	168, 418, 588
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BtuMI	TCGCGA	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	403
CciNI	GCGGCCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	182
Cfr42I	CCGCGG	1 cut(s)	181
CpoI	CGGWCCG	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	8, 109, 208
CspAI	ACCGGT	1 cut(s)	96
CspI	CGGWCCG	1 cut(s)	182
CviAII	CATG	3 cut(s)	15, 149, 223
CviJI	RGCY	5 cut(s)	91, 157, 229, 392, 405
CviKI_1	RGCY	5 cut(s)	91, 157, 229, 392, 405
CviQI	GTAC	3 cut(s)	8, 109, 208
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	390
EagI	CGGCCG	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	41, 480
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	395, 435, 612
FaeI	CATG	3 cut(s)	18, 152, 226
FatI	CATG	3 cut(s)	14, 148, 222
FauI	CCCGC	2 cut(s)	11, 394
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	178, 315, 390, 393
FokI	GGATG	3 cut(s)	175, 425, 595
Fsp4HI	GCNGC	4 cut(s)	178, 315, 390, 393
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	4 cut(s)	178, 315, 390, 393
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	97, 168
Hin1II	CATG	3 cut(s)	18, 152, 226
HinfI	GANTC	5 cut(s)	32, 269, 459, 483, 519
HpaII	CCGG	2 cut(s)	97, 168
HphI	GGTGA	3 cut(s)	211, 223, 599
Hpy166II	GTNNAC	2 cut(s)	145, 189
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	43, 454
Hpy8I	GTNNAC	2 cut(s)	145, 189
HpyAV	CCTTC	2 cut(s)	40, 478
HpyCH4III	ACNGT	2 cut(s)	235, 251
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	3 cut(s)	247, 317, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 407, 427
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	18, 152, 226
KspI	CCGCGG	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	110, 181, 382, 409, 411, 422, 449, 599, 626
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	107
MbiI	CCGCTC	1 cut(s)	287
MboII	GAAGA	4 cut(s)	63, 208, 478, 525
MfeI	CAATTG	2 cut(s)	27, 573
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	6 cut(s)	27, 129, 172, 337, 573, 604
MlyI	GAGTC	4 cut(s)	26, 453, 492, 528
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	4 cut(s)	101, 237, 257, 357
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	97, 168
MspR9I	CCNGG	4 cut(s)	169, 397, 437, 614
MunI	CAATTG	2 cut(s)	27, 573
MvaI	CCWGG	3 cut(s)	397, 437, 614
MvnI	CGCG	2 cut(s)	180, 455
MwoI	GCNNNNNNNGC	3 cut(s)	398, 407, 427
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	3 cut(s)	18, 152, 226
NlaIV	GGNNCC	2 cut(s)	296, 618
NotI	GCGGCCGC	1 cut(s)	390
NruI	TCGCGA	1 cut(s)	455
NspI	RCATGY	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	179, 316, 391, 394
PleI	GAGTC	4 cut(s)	26, 453, 491, 527
PpsI	GAGTC	4 cut(s)	26, 453, 491, 527
Psp6I	CCWGG	3 cut(s)	395, 435, 612
PspGI	CCWGG	3 cut(s)	395, 435, 612
PspN4I	GGNNCC	2 cut(s)	296, 618
PspPI	GGNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	455
RsaI	GTAC	3 cut(s)	9, 110, 209
RsaNI	GTAC	3 cut(s)	8, 109, 208
Rsr2I	CGGWCCG	1 cut(s)	182
RsrII	CGGWCCG	1 cut(s)	182
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	4 cut(s)	101, 237, 257, 357
SatI	GCNGC	4 cut(s)	178, 315, 390, 393
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	4 cut(s)	26, 453, 492, 528
ScrFI	CCNGG	4 cut(s)	169, 397, 437, 614
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	7 cut(s)	9, 51, 93, 110, 231, 438, 470
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	41
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 304
SmoI	CTYRAG	2 cut(s)	41, 304
Sse9I	AATT	6 cut(s)	27, 129, 172, 337, 573, 604
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	4 cut(s)	167, 395, 435, 612
TaaI	ACNGT	2 cut(s)	235, 251
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	42, 153, 522
TasI	AATT	6 cut(s)	27, 129, 172, 337, 573, 604
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	3 cut(s)	180, 392, 395
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	4 cut(s)	101, 237, 257, 357
Tru9I	TTAA	4 cut(s)	101, 237, 257, 357
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	74, 141, 239
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	129, 604
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.