Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

5986033 .. 5991311

Gene Structure 5279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGATACAGACGAGCGGGAAGCCCATAGAGTCGTTATTGGAGAGGGTGCTATGTATGAACATTCTTTCCTCCGATTACTTCAAGGAGCTTTACAGGTTGAAGACCTATCATGAAGTCGTCGATGAGATTTACAATCAAGTTGACCACGTCGAGCCGTGGATGACCGGAAATTGCCGAGGACCGTCCACTGCATTTTGCTTGCTTTACAAGTTCTTCACCATGAAACTCACCGTCAAGCAAATGCACGGCCTCTTGAAGCACAAAGACTCTCCTTACATCAGAGCGGTTGGATTCCTCTACTTGAGATATGCTGCTGACCCGAAGACGATTTGGAATTGGGTTGAGCCCTATATTACCGATGATGAGAAATTTGCTCCAGGTTCCAATGGACGAATGACCACTATGGGTGTATATGTTCGTGATTTGCTACTTGGGCAGTACTACTTTGATACACTTTTCCCTCGCATACCTGTTCCTGTGTTGCGGCAGATTACAGCTCACCTTGAGAAGATGAAACTCCCAACGAAACTCTCAGGTGTTACTGGGGAGGCTACCCGTCATGGATCAGATGACACTGCCCGTCGCCCACCATCTGTGAAAGCAGCACTTTCAGTCTCCTTTGGTCAACGTGCCCCACACCGTGCTTCAACGAGGGACTCGTCACCTGTTCGTCGTACTTTACCACCACCACCACCTTATGAAAAAACTAGCACTGATGATTTACATAGCCGTCGTAGCCAGAGCCGTGACTATTCTGACAGAGACTATTCAGACAGGGACAGGGGAAGGGATAGGGATAGGGATAGGGACAGGAATCGGGAAAGAGACAGGGATAGTGATCGTGACCGAGAAAGATACAAGGAACGAGAGAGAGGCCGAGACAGAGACAGATCAAGGGATAGAGAACGGAGTTCTGATTATGATAGGAGGCCAAGATATGCAGAGAGAGAAAGCCGAAGGGACTATTATGAGAGTGGCCGTGATGGTGGTAGACATTCACGTAGGAGTAGGAGTCGGAGCCGCAGTAGAAGCAGGAGTAGAAGTCGGAGCTTGCAAGCTGGCACTGCTCCTCATGTAAGCCCGCCGAGAGATGTAAACAAAGATAGAACATCTGTGTCTAGCAATCTGGCAAAACTTAGGGATCTTTATGGTGATGTGAGTGTCCAAAAAGGGGATACTAGTATGGATAGGATTCCCAGGAGCGATACAGGTGCTGAAGATGTGATTAGGCTTGGTGGTCACCGATGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

419

Amino Acids

48.88

Weight (kDa)

9.93

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	7 - 161	1.4e-50	PRP38 family
PRP38_assoc	PF12871	186 - 273	6.5e-09	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	18, 287
AccI	GTMKAC	1 cut(s)	994
AciI	CCGC	5 cut(s)	18, 287, 487, 1024, 1085
AclWI	GGATC	2 cut(s)	574, 1152
AcoI	YGGCCR	1 cut(s)	979
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	1239
AdeI	CACNNNGTG	1 cut(s)	644
AfaI	GTAC	2 cut(s)	443, 679
AfiI	CCNNNNNNNGG	1 cut(s)	1174
AgsI	TTSAA	4 cut(s)	85, 103, 259, 651
AhlI	ACTAGT	1 cut(s)	1181
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	379, 1199
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	91, 500, 1053, 1061
AluI	AGCT	4 cut(s)	91, 500, 1053, 1061
Alw26I	GTCTC	5 cut(s)	622, 759, 822, 876, 882
AlwI	GGATC	2 cut(s)	574, 1152
AlwNI	CAGNNNCTG	1 cut(s)	1217
AoxI	GGCC	4 cut(s)	250, 877, 932, 979
ApeKI	GCWGC	2 cut(s)	314, 605
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	6 cut(s)	211, 223, 494, 657, 1166, 1235
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	110, 332
BbvI	GCAGC	2 cut(s)	301, 617
BccI	CCATC	3 cut(s)	601, 980, 1242
BceAI	ACGGC	5 cut(s)	142, 265, 717, 732, 966
BcgI	CGANNNNNNTGC	2 cut(s)	1196, 1230
BciT130I	CCWGG	2 cut(s)	381, 1201
BciVI	GTATCC	1 cut(s)	1171
BcoDI	GTCTC	5 cut(s)	622, 759, 822, 876, 882
BcuI	ACTAGT	1 cut(s)	1181
BfaI	CTAG	3 cut(s)	711, 1122, 1182
BfuI	GTATCC	1 cut(s)	1171
BisI	GCNGC	4 cut(s)	315, 488, 606, 1024
BlsI	GCNGC	4 cut(s)	316, 489, 607, 1025
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	381, 1201
Bme18I	GGWCC	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	385, 1022
BmrFI	CCNGG	2 cut(s)	381, 1201
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	2 cut(s)	110, 332
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	325, 527
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	158, 178, 1199
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	6 cut(s)	1000, 1012, 1030, 1030, 1042, 1060
Bsc4I	CCNNNNNNNGG	1 cut(s)	1174
Bse1I	ACTGG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	2 cut(s)	381, 1201
BseDI	CCNNGG	3 cut(s)	158, 178, 1199
BseGI	GGATG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	1 cut(s)	1174
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	1062
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	301, 617
BshFI	GGCC	4 cut(s)	252, 879, 934, 981
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	4 cut(s)	671, 794, 824, 977
BslI	CCNNNNNNNGG	1 cut(s)	1174
BsmAI	GTCTC	5 cut(s)	622, 759, 822, 876, 882
BsmFI	GGGAC	4 cut(s)	671, 794, 824, 977
BsnI	GGCC	4 cut(s)	252, 879, 934, 981
Bsp1286I	GDGCHC	2 cut(s)	351, 637
Bsp143I	GATC	4 cut(s)	566, 841, 893, 1144
BspACI	CCGC	5 cut(s)	18, 287, 487, 1024, 1085
BspANI	GGCC	4 cut(s)	252, 879, 934, 981
BspCNI	CTCAG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	385, 1022
BspPI	GGATC	2 cut(s)	574, 1152
BsrBI	CCGCTC	2 cut(s)	18, 287
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	158, 178, 1199
BssMI	GATC	4 cut(s)	566, 841, 893, 1144
Bst2UI	CCWGG	2 cut(s)	381, 1201
Bst4CI	ACNGT	3 cut(s)	186, 235, 644
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	5 cut(s)	203, 1055, 1059, 1063, 1085
BstDEI	CTNAG	2 cut(s)	535, 1139
BstDSI	CCRYGG	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	1241
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	4 cut(s)	569, 844, 896, 1147
BstMAI	GTCTC	5 cut(s)	622, 759, 822, 876, 882
BstMBI	GATC	4 cut(s)	566, 841, 893, 1144
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 738, 1032, 1067
BstNI	CCWGG	2 cut(s)	381, 1201
BstPI	GGTNACC	1 cut(s)	1241
BstSCI	CCNGG	2 cut(s)	379, 1199
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	2 cut(s)	301, 617
BstV2I	GAAGAC	2 cut(s)	110, 332
BstX2I	RGATCY	1 cut(s)	1144
BstYI	RGATCY	1 cut(s)	1144
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	4 cut(s)	252, 879, 934, 981
BtgI	CCRYGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	3 cut(s)	189, 576, 1065
BtsIMutI	CAGTG	4 cut(s)	189, 576, 714, 1065
Cac8I	GCNNGC	5 cut(s)	203, 1055, 1059, 1063, 1085
CaiI	CAGNNNCTG	1 cut(s)	1217
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	442, 678
CviAII	CATG	4 cut(s)	113, 223, 563, 1076
CviQI	GTAC	2 cut(s)	442, 678
DdeI	CTNAG	2 cut(s)	535, 1139
DpnI	GATC	4 cut(s)	568, 843, 895, 1146
DpnII	GATC	4 cut(s)	566, 841, 893, 1144
DraIII	CACNNNGTG	1 cut(s)	644
EaeI	YGGCCR	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	1239
Eco91I	GGTNACC	1 cut(s)	1241
EcoO65I	GGTNACC	1 cut(s)	1241
EcoRII	CCWGG	2 cut(s)	379, 1199
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	4 cut(s)	116, 226, 566, 1079
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	4 cut(s)	671, 794, 824, 977
FatI	CATG	4 cut(s)	112, 222, 562, 1075
FauI	CCCGC	2 cut(s)	11, 1092
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	4 cut(s)	315, 488, 606, 1024
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	4 cut(s)	315, 488, 606, 1024
FspBI	CTAG	3 cut(s)	711, 1122, 1182
GluI	GCNGC	4 cut(s)	315, 488, 606, 1024
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	252, 879, 934, 981
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	4 cut(s)	116, 226, 566, 1079
HincII	GTYRAC	2 cut(s)	145, 629
HindII	GTYRAC	2 cut(s)	145, 629
HinfI	GANTC	7 cut(s)	32, 269, 294, 659, 817, 1015, 1195
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	6 cut(s)	211, 223, 494, 657, 1166, 1235
Hpy166II	GTNNAC	5 cut(s)	145, 189, 629, 995, 1099
Hpy188I	TCNGA	8 cut(s)	76, 284, 571, 760, 775, 919, 1020, 1050
Hpy188III	TCNNGA	5 cut(s)	113, 256, 422, 821, 845
Hpy8I	GTNNAC	5 cut(s)	145, 189, 629, 995, 1099
Hpy99I	CGWCG	5 cut(s)	125, 155, 588, 678, 738
HpyAV	CCTTC	2 cut(s)	783, 954
HpyCH4III	ACNGT	3 cut(s)	186, 235, 644
HpyCH4IV	ACGT	3 cut(s)	150, 631, 1003
HpyCH4V	TGCA	4 cut(s)	194, 247, 944, 1057
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 738, 1032, 1067
HpyF3I	CTNAG	2 cut(s)	535, 1139
HpySE526I	ACGT	3 cut(s)	150, 631, 1003
Hsp92II	CATG	4 cut(s)	116, 226, 566, 1079
Kzo9I	GATC	4 cut(s)	566, 841, 893, 1144
LmnI	GCTCC	6 cut(s)	88, 382, 1020, 1050, 1075, 1203
Lsp1109I	GCAGC	2 cut(s)	301, 617
MaeI	CTAG	3 cut(s)	711, 1122, 1182
MaeII	ACGT	3 cut(s)	150, 631, 1003
MaeIII	GTNAC	5 cut(s)	541, 663, 749, 845, 1241
MalI	GATC	4 cut(s)	568, 843, 895, 1146
MbiI	CCGCTC	2 cut(s)	18, 287
MboI	GATC	4 cut(s)	566, 841, 893, 1144
MboII	GAAGA	5 cut(s)	115, 208, 337, 523, 1232
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	2 cut(s)	351, 637
MluCI	AATT	3 cut(s)	172, 337, 371
MlyI	GAGTC	4 cut(s)	41, 263, 653, 1024
MmeI	TCCRAC	3 cut(s)	271, 998, 1028
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	381, 1201
MvaI	CCWGG	2 cut(s)	381, 1201
MwoI	GCNNNNNNNGC	4 cut(s)	436, 738, 1032, 1067
NdeII	GATC	4 cut(s)	566, 841, 893, 1144
NlaIII	CATG	4 cut(s)	116, 226, 566, 1079
NlaIV	GGNNCC	2 cut(s)	385, 1022
NmeAIII	GCCGAG	3 cut(s)	203, 905, 1113
NmuCI	GTSAC	4 cut(s)	663, 749, 845, 1241
PagI	TCATGA	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	294, 817, 1195
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	316, 489, 607, 1025
PleI	GAGTC	4 cut(s)	40, 263, 653, 1023
PpsI	GAGTC	4 cut(s)	40, 263, 653, 1023
Ppu21I	YACGTR	1 cut(s)	1004
Psp6I	CCWGG	2 cut(s)	379, 1199
PspEI	GGTNACC	1 cut(s)	1241
PspGI	CCWGG	2 cut(s)	379, 1199
PspN4I	GGNNCC	2 cut(s)	385, 1022
PspPI	GGNCC	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	1217
PsuI	RGATCY	1 cut(s)	1144
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	443, 679
RsaNI	GTAC	2 cut(s)	442, 678
SatI	GCNGC	4 cut(s)	315, 488, 606, 1024
Sau3AI	GATC	4 cut(s)	566, 841, 893, 1144
Sau96I	GGNCC	1 cut(s)	182
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	4 cut(s)	41, 263, 653, 1024
ScrFI	CCNGG	2 cut(s)	381, 1201
SduI	GDGCHC	2 cut(s)	351, 637
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	304, 506
SmoI	CTYRAG	2 cut(s)	304, 506
SpeI	ACTAGT	1 cut(s)	1181
Sse9I	AATT	3 cut(s)	172, 337, 371
SsiI	CCGC	5 cut(s)	18, 287, 487, 1024, 1085
SspMI	CTAG	3 cut(s)	711, 1122, 1182
StyD4I	CCNGG	2 cut(s)	379, 1199
TaaI	ACNGT	3 cut(s)	186, 235, 644
TaiI	ACGT	3 cut(s)	153, 634, 1006
TaqI	TCGA	2 cut(s)	123, 153
TaqII	GACCGA	1 cut(s)	864
TasI	AATT	3 cut(s)	172, 337, 371
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	2 cut(s)	490, 1026
TfiI	GAWTC	3 cut(s)	294, 817, 1195
TscAI	CASTG	4 cut(s)	196, 583, 721, 1072
TseFI	GTSAC	4 cut(s)	663, 749, 845, 1241
TseI	GCWGC	2 cut(s)	314, 605
Tsp45I	GTSAC	4 cut(s)	663, 749, 845, 1241
TspDTI	ATGAA	5 cut(s)	74, 129, 239, 530, 717
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	4 cut(s)	196, 583, 721, 1072
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	994
XspI	CTAG	3 cut(s)	711, 1122, 1182
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.