Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037096.1

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 622

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037096.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 520 bp

tactactttgatacacttttccctcgcatacctgttcctgtgttgcggcagattacagctaatcttgagaagatgaaactcccaacaaaactctctggtgttactggggaggctacccgtcatggatctgatgacactgcccgtcgcccaccttctgtgaaagcggcactttcagtctcctttggtcaacgtgccccacaccgtgcttcgacgagggactcatcacctgttcgtcgaactttaccgccaccgccaccttatgaaaaagctagcactgatgatttacggagccgtcgtagccagagccgtgagtattctgacagagaccattcggacagggataggggaagggaccgggatcggaatcgggaaagagacagggatagtgatcgtgatcgtgaacgagaaaggtacaaggaacgggagaggggtcgagatagagacagatcaagggatagagaacgaagttctgattatgataggaggtcaagatatgcagagagagaaagccggagggact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

173

Amino Acids

20.63

Weight (kDa)

10.6

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	46, 164, 245, 251
AclWI	GGATC	2 cut(s)	133, 366
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	413
AluBI	AGCT	2 cut(s)	59, 269
AluI	AGCT	2 cut(s)	59, 269
Alw26I	GTCTC	4 cut(s)	181, 318, 369, 435
AlwI	GGATC	2 cut(s)	133, 366
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	216
AsuNHI	GCTAGC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	276, 291
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	4 cut(s)	181, 318, 369, 435
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	47, 165
BlsI	GCNGC	2 cut(s)	48, 166
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	290, 353
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	356
BsaBI	GATNNNNATC	3 cut(s)	363, 387, 393
BsaI	GGTCTC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	3 cut(s)	363, 387, 393
BseJI	GATNNNNATC	3 cut(s)	363, 387, 393
BseNI	ACTGG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	355, 511
BslFI	GGGAC	2 cut(s)	230, 365
BsmAI	GTCTC	4 cut(s)	181, 318, 369, 435
BsmFI	GGGAC	2 cut(s)	230, 365
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	125, 358, 388, 394, 446
BspACI	CCGC	4 cut(s)	46, 164, 245, 251
BspLI	GGNNCC	2 cut(s)	290, 353
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	133, 366
BspTNI	GGTCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	5 cut(s)	125, 358, 388, 394, 446
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	128, 361, 391, 397, 449
BstMAI	GTCTC	4 cut(s)	181, 318, 369, 435
BstMBI	GATC	5 cut(s)	125, 358, 388, 394, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 273
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	7 cut(s)	59, 113, 269, 291, 300, 306, 510
CviKI_1	RGCY	7 cut(s)	59, 113, 269, 291, 300, 306, 510
CviQI	GTAC	1 cut(s)	412
DpnI	GATC	5 cut(s)	127, 360, 390, 396, 448
DpnII	GATC	5 cut(s)	125, 358, 388, 394, 446
DraIII	CACNNNGTG	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	352
FaeI	CATG	1 cut(s)	125
FaiI	YATR	5 cut(s)	29, 123, 261, 477, 495
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	230, 365
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	47, 165
Fsp4HI	GCNGC	2 cut(s)	47, 165
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	47, 165
HapII	CCGG	2 cut(s)	355, 511
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	218, 364
HpaII	CCGG	2 cut(s)	355, 511
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	188, 401
Hpy188I	TCNGA	5 cut(s)	130, 319, 334, 363, 472
Hpy188III	TCNNGA	6 cut(s)	65, 368, 392, 398, 434, 489
Hpy8I	GTNNAC	2 cut(s)	188, 401
Hpy99I	CGWCG	4 cut(s)	147, 214, 237, 297
HpyAV	CCTTC	2 cut(s)	162, 342
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	125, 358, 388, 394, 446
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	45, 51, 81, 90, 240, 314, 322, 364, 368
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	5 cut(s)	127, 360, 390, 396, 448
MboI	GATC	5 cut(s)	125, 358, 388, 394, 446
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	33, 103, 207, 420, 477, 507
MspI	CCGG	2 cut(s)	355, 511
MspR9I	CCNGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	5 cut(s)	125, 358, 388, 394, 446
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	290, 353
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	48, 166
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	290, 353
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	2 cut(s)	47, 165
Sau3AI	GATC	5 cut(s)	125, 358, 388, 394, 446
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	34, 61, 154, 193, 229, 259, 271, 413, 488
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	4 cut(s)	46, 164, 245, 251
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	209, 235, 433
TauI	GCSGC	2 cut(s)	49, 167
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	2 cut(s)	142, 280
TspDTI	ATGAA	2 cut(s)	89, 276
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	142, 280
VpaK11BI	GGWCC	1 cut(s)	352
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.