Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

13054425 .. 13059639

Gene Structure 5215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGATACAGACGAGCGGGAAACCAATTGACTCGTTATTGGAGAAGGTGCTATGTATGAACATTCTGTCTTCCGATTACTTCAAGGAGCTTTACAGGTTGAAGACGTACCATGAAGTTGTGGATGAGATTTACAATCAAGTTGACCACGTCGAGCCGTGGATGACTGGGAATTGCCGAGGTCCTTCTACTGCATTTTGCTTACTCTACAAGTTCTTCACCATGAAACTCACCGTCAAGCAAATGCACGGCCTCTTGAAGCACAAGGACTCTCCTTACATTCGAGCGGTTGGGTTCCTCTACTTGAGATATGCTGCAGACCCGAAGACGATTTGGAATTGGGTTGAGCCCTATATTACAGATGACGAGAAATTCTCTCCAGGTTCCAATGGACGAATGACCACTATGGGTGTATATGTGCGTGATTTGCTACTTGGGCAGTACTACTTTGATACACTTTTCCCTCGCATACCTGTTCCTGTGTTGCGGCAGATTACAGCTAATCTTGAGAAGATGAAACTCCCAACAAAACTCTCTGGTGTTACTGGGGAGGCTACCCGTCATGGATCTGATGACACTGCCCGTCGCCCACCTTCTGTGAAGGCGGCACTTTCAGTCTCCTTTGGTCAACGTGCCCCACACCGTGCTTCGACGAGGGACTCATCACCTGTTCGTCGAACTTTACCGCCACCGCCACCTTATGAAAAAGCTAGCACTGATGATTTACGGAGCCGTCGTAGCCAGAGCCGTGAGTATTCTGACAGAGACTATTCGGACAGGGACAGGGATAGGGGAAGGGACCGGGATCGGAATCGGGAAAGAGACAGGAATAGTGATCGTGATCGTGAACAAGAAAGGTACAAGGAACGGGAGAGGGGTCGAGATAGAGACAGATCAAGGGATAGAGAACGAAGTTCTGATTATGATAGGAGGTCAAGATTTGCAGAGAGAGGAAGCCGGAGGGACTATTATGAGAGTAGCCGTGATGGTGGTAGACATTCACGTAGGAGTAGGAGTCGAAGCCGCAGTAGAAGCAGGAGTAGGAGTCGGAGCTTGCAAGCTGGCACTGCTCCTCATGTAAGCCCGCCGAGAGATGTAAACAAGGATAGAACATCTGTATCTAGCAATCTGGCAAAACTTAGGGATCTTTATGGTGATGTGAGTGTCCAAAAAGGGGATACTAGTATGGATAGGATTCCGAGGAGCGATAACGGTGCTGAAGAGGTGATTAGGCTTGGTGGTCACCGATGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

418

Amino Acids

48.78

Weight (kDa)

10.01

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	7 - 161	6.9e-51	PRP38 family
PRP38_assoc	PF12871	186 - 275	6.7e-08	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	18, 287
AccI	GTMKAC	1 cut(s)	994
AciI	CCGC	8 cut(s)	18, 287, 487, 605, 686, 692, 1024, 1085
AclWI	GGATC	3 cut(s)	574, 813, 1152
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	1239
AdeI	CACNNNGTG	1 cut(s)	644
AfaI	GTAC	3 cut(s)	110, 443, 860
AfiI	CCNNNNNNNGG	1 cut(s)	1174
AgsI	TTSAA	3 cut(s)	85, 103, 259
AhlI	ACTAGT	1 cut(s)	1181
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	5 cut(s)	91, 500, 710, 1053, 1061
AluI	AGCT	5 cut(s)	91, 500, 710, 1053, 1061
Alw26I	GTCTC	4 cut(s)	622, 759, 816, 882
AlwI	GGATC	3 cut(s)	574, 813, 1152
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	182, 799
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	6 cut(s)	211, 223, 657, 1166, 1235, 1237
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	182, 799
BaeGI	GKGCMC	1 cut(s)	637
BaeI	ACNNNNGTAYC	2 cut(s)	1101, 1134
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	3 cut(s)	63, 110, 332
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	980, 1242
BceAI	ACGGC	5 cut(s)	142, 265, 717, 732, 966
BcgI	CGANNNNNNTGC	2 cut(s)	1196, 1230
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	1171
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	4 cut(s)	622, 759, 816, 882
BcuI	ACTAGT	1 cut(s)	1181
BfaI	CTAG	3 cut(s)	711, 1122, 1182
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	1171
BisI	GCNGC	4 cut(s)	315, 488, 606, 1024
BlsI	GCNGC	4 cut(s)	316, 489, 607, 1025
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	381, 803
Bme18I	GGWCC	2 cut(s)	182, 799
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	182, 799
BmiI	GGNNCC	4 cut(s)	296, 385, 731, 800
BmrFI	CCNGG	2 cut(s)	381, 803
BmrI	ACTGGG	2 cut(s)	177, 555
BmtI	GCTAGC	1 cut(s)	714
BmuI	ACTGGG	2 cut(s)	177, 555
BpiI	GAAGAC	3 cut(s)	63, 110, 332
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	325, 527
BpuMI	CCSGG	1 cut(s)	803
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	2 cut(s)	810, 840
BsaJI	CCNNGG	3 cut(s)	158, 178, 1199
BsaXI	ACNNNNNCTCC	6 cut(s)	721, 751, 1000, 1030, 1030, 1060
Bsc4I	CCNNNNNNNGG	1 cut(s)	1174
Bse1I	ACTGG	2 cut(s)	172, 550
Bse8I	GATNNNNATC	2 cut(s)	810, 840
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	158, 178, 1199
BseGI	GGATG	2 cut(s)	130, 168
BseJI	GATNNNNATC	2 cut(s)	810, 840
BseLI	CCNNNNNNNGG	1 cut(s)	1174
BseNI	ACTGG	2 cut(s)	172, 550
BseRI	GAGGAG	2 cut(s)	1062, 1216
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	802, 958
BslFI	GGGAC	4 cut(s)	671, 794, 812, 977
BslI	CCNNNNNNNGG	1 cut(s)	1174
BsmAI	GTCTC	4 cut(s)	622, 759, 816, 882
BsmFI	GGGAC	4 cut(s)	671, 794, 812, 977
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	351, 637
Bsp143I	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
BspACI	CCGC	8 cut(s)	18, 287, 487, 605, 686, 692, 1024, 1085
BspANI	GGCC	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	296, 385, 731, 800
BspMAI	CTGCAG	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	574, 813, 1152
BsrBI	CCGCTC	2 cut(s)	18, 287
BsrI	ACTGG	2 cut(s)	172, 550
BssECI	CCNNGG	3 cut(s)	158, 178, 1199
BssMI	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	235, 644, 1214
Bst6I	CTCTTC	1 cut(s)	1215
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	5 cut(s)	712, 1055, 1059, 1063, 1085
BstDEI	CTNAG	1 cut(s)	1139
BstDSI	CCRYGG	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	1241
BstF5I	GGATG	2 cut(s)	130, 168
BstKTI	GATC	6 cut(s)	569, 808, 838, 844, 896, 1147
BstMAI	GTCTC	4 cut(s)	622, 759, 816, 882
BstMBI	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
BstMWI	GCNNNNNNNGC	5 cut(s)	427, 436, 738, 1032, 1067
BstNI	CCWGG	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	1241
BstSCI	CCNGG	2 cut(s)	379, 801
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	3 cut(s)	63, 110, 332
BstX2I	RGATCY	2 cut(s)	566, 1144
BstYI	RGATCY	2 cut(s)	566, 1144
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	130, 168
BtsI	GCAGTG	2 cut(s)	576, 1065
BtsIMutI	CAGTG	3 cut(s)	576, 714, 1065
Cac8I	GCNNGC	5 cut(s)	712, 1055, 1059, 1063, 1085
Cfr13I	GGNCC	2 cut(s)	182, 799
Csp6I	GTAC	3 cut(s)	109, 442, 859
CviAII	CATG	4 cut(s)	113, 223, 563, 1076
CviQI	GTAC	3 cut(s)	109, 442, 859
DdeI	CTNAG	1 cut(s)	1139
DpnI	GATC	6 cut(s)	568, 807, 837, 843, 895, 1146
DpnII	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
DraIII	CACNNNGTG	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	1215
EarI	CTCTTC	1 cut(s)	1215
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	182, 799
Eco57I	CTGAAG	1 cut(s)	1239
Eco91I	GGTNACC	1 cut(s)	1241
EcoO109I	RGGNCCY	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	1241
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	4 cut(s)	116, 226, 566, 1079
FaqI	GGGAC	4 cut(s)	671, 794, 812, 977
FatI	CATG	4 cut(s)	112, 222, 562, 1075
FauI	CCCGC	2 cut(s)	11, 1092
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	4 cut(s)	315, 488, 606, 1024
FokI	GGATG	2 cut(s)	137, 175
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	4 cut(s)	315, 488, 606, 1024
FspBI	CTAG	3 cut(s)	711, 1122, 1182
GluI	GCNGC	4 cut(s)	315, 488, 606, 1024
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	802, 958
Hin1II	CATG	4 cut(s)	116, 226, 566, 1079
HincII	GTYRAC	2 cut(s)	145, 629
HindII	GTYRAC	2 cut(s)	145, 629
HinfI	GANTC	7 cut(s)	32, 269, 659, 811, 1015, 1045, 1195
HpaII	CCGG	2 cut(s)	802, 958
HphI	GGTGA	6 cut(s)	211, 223, 657, 1166, 1235, 1237
Hpy166II	GTNNAC	5 cut(s)	145, 629, 848, 995, 1099
Hpy188I	TCNGA	8 cut(s)	76, 571, 760, 775, 810, 919, 1050, 1200
Hpy188III	TCNNGA	7 cut(s)	256, 506, 815, 839, 845, 881, 936
Hpy8I	GTNNAC	5 cut(s)	145, 629, 848, 995, 1099
Hpy99I	CGWCG	5 cut(s)	155, 588, 655, 678, 738
HpyAV	CCTTC	5 cut(s)	40, 195, 595, 603, 789
HpyCH4III	ACNGT	3 cut(s)	235, 644, 1214
HpyCH4IV	ACGT	4 cut(s)	107, 150, 631, 1003
HpyCH4V	TGCA	5 cut(s)	194, 247, 317, 944, 1057
HpyF10VI	GCNNNNNNNGC	5 cut(s)	427, 436, 738, 1032, 1067
HpyF3I	CTNAG	1 cut(s)	1139
HpySE526I	ACGT	4 cut(s)	107, 150, 631, 1003
Hsp92II	CATG	4 cut(s)	116, 226, 566, 1079
Kzo9I	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
LmnI	GCTCC	5 cut(s)	88, 729, 1050, 1075, 1203
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	711, 1122, 1182
MaeII	ACGT	4 cut(s)	107, 150, 631, 1003
MaeIII	GTNAC	2 cut(s)	541, 1241
MalI	GATC	6 cut(s)	568, 807, 837, 843, 895, 1146
MbiI	CCGCTC	2 cut(s)	18, 287
MboI	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
MboII	GAAGA	6 cut(s)	63, 115, 208, 337, 523, 1232
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	2 cut(s)	566, 1144
MhlI	GDGCHC	2 cut(s)	351, 637
MluCI	AATT	4 cut(s)	27, 172, 337, 371
MlyI	GAGTC	5 cut(s)	26, 263, 653, 1024, 1054
MmeI	TCCRAC	1 cut(s)	1028
MspI	CCGG	2 cut(s)	802, 958
MspR9I	CCNGG	2 cut(s)	381, 803
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	427, 436, 738, 1032, 1067
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	4 cut(s)	116, 226, 566, 1079
NlaIV	GGNNCC	4 cut(s)	296, 385, 731, 800
NmeAIII	GCCGAG	2 cut(s)	203, 1113
NmuCI	GTSAC	1 cut(s)	1241
PcsI	WCGNNNNNNNCGW	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	811, 1195
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	316, 489, 607, 1025
PleI	GAGTC	5 cut(s)	26, 263, 653, 1023, 1053
PpsI	GAGTC	5 cut(s)	26, 263, 653, 1023, 1053
Ppu21I	YACGTR	1 cut(s)	1004
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	1241
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	4 cut(s)	296, 385, 731, 800
PspPI	GGNCC	2 cut(s)	182, 799
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	566, 1144
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	3 cut(s)	110, 443, 860
RsaNI	GTAC	3 cut(s)	109, 442, 859
SatI	GCNGC	4 cut(s)	315, 488, 606, 1024
Sau3AI	GATC	6 cut(s)	566, 805, 835, 841, 893, 1144
Sau96I	GGNCC	2 cut(s)	182, 799
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	5 cut(s)	26, 263, 653, 1024, 1054
ScrFI	CCNGG	2 cut(s)	381, 803
SduI	GDGCHC	2 cut(s)	351, 637
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	182, 799
SmlI	CTYRAG	2 cut(s)	304, 506
SmoI	CTYRAG	2 cut(s)	304, 506
SpeI	ACTAGT	1 cut(s)	1181
Sse9I	AATT	4 cut(s)	27, 172, 337, 371
SsiI	CCGC	8 cut(s)	18, 287, 487, 605, 686, 692, 1024, 1085
SspMI	CTAG	3 cut(s)	711, 1122, 1182
StyD4I	CCNGG	2 cut(s)	379, 801
TaaI	ACNGT	3 cut(s)	235, 644, 1214
TaiI	ACGT	4 cut(s)	110, 153, 634, 1006
TaqI	TCGA	6 cut(s)	153, 283, 650, 676, 880, 1018
TasI	AATT	4 cut(s)	27, 172, 337, 371
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	3 cut(s)	490, 608, 1026
TfiI	GAWTC	2 cut(s)	811, 1195
TscAI	CASTG	3 cut(s)	583, 721, 1072
TseFI	GTSAC	1 cut(s)	1241
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	1241
TspDTI	ATGAA	5 cut(s)	74, 129, 239, 530, 717
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	3 cut(s)	583, 721, 1072
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	182, 799
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	994
XspI	CTAG	3 cut(s)	711, 1122, 1182
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.