Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Reverse (-)

26204986 .. 26205228

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1153700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGGTACAGACAAGTGGGAAATCCATTGACTCATTGCTCGAGAAGGTGTTTTGTATGAACATTCTATCTTTCGACTACTTCAATGAGCTTTACCGGTTAAAGACGTACCATGAAGTCATTGATGAAATTTACAACCAAGTAGACCATGTCGAGCCGTGGATGACCAGGAATTGCCGTGGCCCGTTAACTGCCTTTTATCTGCTGCACAAGTTCTTCACCATGAAACTCATTGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

81

Amino Acids

9.64

Weight (kDa)

6.26

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	5 - 77	7.3e-15	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	2 cut(s)	9, 110
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	192
BceAI	ACGGC	2 cut(s)	142, 162
BciT130I	CCWGG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	158, 178
BsaWI	WCCGGW	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	158, 178
BseGI	GGATG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	41
BspANI	GGCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	158, 178
Bst2UI	CCWGG	1 cut(s)	169
BstDSI	CCRYGG	2 cut(s)	158, 178
BstF5I	GGATG	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	2 cut(s)	158, 178
BtsCI	GGATG	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	8, 109
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	3 cut(s)	113, 149, 223
CviJI	RGCY	3 cut(s)	91, 157, 183
CviKI_1	RGCY	3 cut(s)	91, 157, 183
CviQI	GTAC	2 cut(s)	8, 109
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	3 cut(s)	116, 152, 226
FaiI	YATR	4 cut(s)	59, 114, 150, 224
FatI	CATG	3 cut(s)	112, 148, 222
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	3 cut(s)	116, 152, 226
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	32
HpaI	GTTAAC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	145, 189
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	145, 189
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	116, 152, 226
KspAI	GTTAAC	1 cut(s)	189
LpnPI	CCDG	3 cut(s)	110, 154, 181
Lsp1109I	GCAGC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	107
MboII	GAAGA	1 cut(s)	208
MluCI	AATT	2 cut(s)	129, 172
MlyI	GAGTC	1 cut(s)	26
MseI	TTAA	3 cut(s)	101, 188, 237
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
NlaIII	CATG	3 cut(s)	116, 152, 226
PaeR7I	CTCGAG	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	9, 110
RsaNI	GTAC	2 cut(s)	8, 109
SaqAI	TTAA	3 cut(s)	101, 188, 237
SatI	GCNGC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	4 cut(s)	9, 51, 93, 110
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	129, 172
StyD4I	CCNGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	42, 75, 153
TasI	AATT	2 cut(s)	129, 172
Tru1I	TTAA	3 cut(s)	101, 188, 237
Tru9I	TTAA	3 cut(s)	101, 188, 237
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	4 cut(s)	74, 129, 141, 239
Tth111I	GACNNNGTC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	129
XhoI	CTCGAG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.