Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000990.1

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Reverse (-)

68273 .. 71128

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000990.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggagatacagacgagcgggaaaccaattgactcgttattggagaaggtgctatgtatgaacattctgtcttccgattacttcaaagagctttacaggttgaagacgtatcacgaagttgtggatgagatttacaatcaagtagaccacgtcgagccgtggatgactgggaattgccgaggtccttctactgcgttttgcttactctacaagttcttcaccatgaaactcaccgtcaagcaaatgcacggcctcttgaagcacaaggactctccttacattcgagcggttgggttcctctacttgagatatgctgcagacccgaagaccatttggaattgggttgagccctatattacagatgacgagaaattctctccaggttccaatggacgaatgaccactatgggtgtatatgtgcgtgatttgctacttggccaggttagtttccttccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

152

Amino Acids

17.69

Weight (kDa)

6.89

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	18, 287
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	18, 287
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	85, 103, 259
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	379, 438
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	250, 436
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	211, 223
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	3 cut(s)	63, 110, 332
BbvI	GCAGC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	142, 265
BciT130I	CCWGG	2 cut(s)	381, 440
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	381, 440
Bme18I	GGWCC	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	296, 385
BmrFI	CCNGG	2 cut(s)	381, 440
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	3 cut(s)	63, 110, 332
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	158, 178
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	381, 440
BseDI	CCNNGG	2 cut(s)	158, 178
BseGI	GGATG	2 cut(s)	130, 168
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	2 cut(s)	252, 438
BsnI	GGCC	2 cut(s)	252, 438
Bsp1286I	GDGCHC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	18, 287
BspANI	GGCC	2 cut(s)	252, 438
BspLI	GGNNCC	2 cut(s)	296, 385
BspMAI	CTGCAG	1 cut(s)	319
BsrBI	CCGCTC	2 cut(s)	18, 287
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	158, 178
Bst2UI	CCWGG	2 cut(s)	381, 440
Bst4CI	ACNGT	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	130, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	381, 440
BstSCI	CCNGG	2 cut(s)	379, 438
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	3 cut(s)	63, 110, 332
BsuRI	GGCC	2 cut(s)	252, 438
BtgI	CCRYGG	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	130, 168
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	91, 157, 252, 349, 438
CviKI_1	RGCY	5 cut(s)	91, 157, 252, 349, 438
EaeI	YGGCCR	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	379, 438
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	226
FaiI	YATR	9 cut(s)	55, 59, 224, 312, 354, 407, 415, 417, 457
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	2 cut(s)	137, 175
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	252, 438
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	2 cut(s)	32, 269
HphI	GGTGA	2 cut(s)	211, 223
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	113, 256
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	40, 195
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	107, 150
HpyCH4V	TGCA	2 cut(s)	247, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	107, 150
Hsp92II	CATG	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	82, 153, 366, 393, 425, 452
Lsp1109I	GCAGC	1 cut(s)	301
MaeII	ACGT	2 cut(s)	107, 150
MbiI	CCGCTC	2 cut(s)	18, 287
MboII	GAAGA	4 cut(s)	63, 115, 208, 337
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	4 cut(s)	27, 172, 337, 371
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	26, 263
MnlI	CCTC	3 cut(s)	173, 263, 308
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	381, 440
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	381, 440
MwoI	GCNNNNNNNGC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	296, 385
NmeAIII	GCCGAG	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	2 cut(s)	26, 263
PpsI	GAGTC	2 cut(s)	26, 263
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	379, 438
PspGI	CCWGG	2 cut(s)	379, 438
PspN4I	GGNNCC	2 cut(s)	296, 385
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	149
SatI	GCNGC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	26, 263
ScrFI	CCNGG	2 cut(s)	381, 440
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	8 cut(s)	51, 93, 101, 110, 153, 184, 385, 444
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	4 cut(s)	27, 172, 337, 371
SsiI	CCGC	2 cut(s)	18, 287
StyD4I	CCNGG	2 cut(s)	379, 438
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	110, 153
TaqI	TCGA	2 cut(s)	153, 283
TasI	AATT	4 cut(s)	27, 172, 337, 371
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	74, 239
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.