Rh3CG285800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002200
Physical Location & Seq
Reverse (-)
28811300 .. 28829704
18405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG285800.1

Sequence Viewer

Length: 519 bp
ATGGCGCCGCCGCAGCTGAGGGCCTTCACTGTGGAGCTCGACGTCAGCGCCGACGACGTAGAAAAGGCGAAGCTAGATGATGAACTATCAAATTTGTTGGGAGAGCTAAAGAATATGTCTCTCACAGCCTTCATTTCTTCCCAAACTGAGACTGAGAGGCCGCCACCTTCATTATCAGTCCTTTTTCTCAAACCCGATCTGAACCGAGAGAGGCTGCCATATCCGCCAACGACCAGCACTGCTCTCTCTCTTCTCTTCACCTGCACTGCTGCACTGCCGAGACTGAGAGAACTCGCAGACGCGGAGAGGCAGAGGCTCGAAATCCCGATCTGTTCCAATGGACGAATGACCACTATGGGTGTATATGTGCGTGATTTGCTACTTGGGCAGGCTGGTGAGCCACCGTCTCCAAGGGCGGCACATGCTGCAGCTGCAGTAGGGACTATGGCAAAAGCAAATCTGTGGAAGCCTGTTGATGGATGGTATTTTGATCGACTTTATAATGATGATGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.0

Weight (kDa)

4.96

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 269
AatII GACGTC 1 cut(s) 45
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 302
AciI CCGC 6 cut(s) 8, 11, 161, 224, 302, 416
AcsI RAATTY 1 cut(s) 91
AcyI GRCGYC 2 cut(s) 5, 42
AfiI CCNNNNNNNGG 1 cut(s) 476
AluBI AGCT 5 cut(s) 16, 37, 73, 106, 431
AluI AGCT 5 cut(s) 16, 37, 73, 106, 431
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 4 cut(s) 123, 143, 274, 411
AoxI GGCC 2 cut(s) 21, 158
ApeKI GCWGC 6 cut(s) 13, 214, 269, 425, 428, 431
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 2 cut(s) 7, 50
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 250, 407
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 6 cut(s) 25, 201, 256, 412, 418, 440
BccI CCATC 2 cut(s) 470, 474
BcoDI GTCTC 4 cut(s) 123, 143, 274, 411
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 2 cut(s) 426, 432
BfoI RGCGCY 2 cut(s) 8, 51
BfuAI ACCTGC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 17
BsaHI GRCGYC 2 cut(s) 5, 42
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 4 cut(s) 8, 138, 144, 275
BseXI GCAGC 6 cut(s) 25, 201, 256, 412, 418, 440
BsgI GTGCAG 2 cut(s) 247, 255
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 23, 160
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 4 cut(s) 123, 143, 274, 411
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 2 cut(s) 23, 160
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 196, 327, 490
BspACI CCGC 6 cut(s) 8, 11, 161, 224, 302, 416
BspANI GGCC 2 cut(s) 23, 160
BspCNI CTCAG 4 cut(s) 9, 139, 145, 276
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 2 cut(s) 430, 436
BspMI ACCTGC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 3 cut(s) 196, 327, 490
BssNI GRCGYC 2 cut(s) 5, 42
BssT1I CCWWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 31, 405
Bst6I CTCTTC 2 cut(s) 255, 260
BstACI GRCGYC 2 cut(s) 5, 42
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 4 cut(s) 17, 147, 153, 284
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 2 cut(s) 8, 51
BstHHI GCGC 2 cut(s) 7, 50
BstKTI GATC 3 cut(s) 199, 330, 493
BstMAI GTCTC 4 cut(s) 123, 143, 274, 411
BstMBI GATC 3 cut(s) 196, 327, 490
BstMWI GCNNNNNNNGC 7 cut(s) 13, 223, 376, 385, 422, 425, 431
BstNSI RCATGY 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 426, 432
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 6 cut(s) 25, 201, 256, 412, 418, 440
BsuRI GGCC 2 cut(s) 23, 160
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 3 cut(s) 237, 264, 272
BtsIMutI CAGTG 4 cut(s) 27, 237, 264, 272
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 2 cut(s) 7, 50
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 308
CviAII CATG 1 cut(s) 422
DdeI CTNAG 4 cut(s) 17, 147, 153, 284
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 198, 329, 492
DpnII GATC 3 cut(s) 196, 327, 490
Eam1104I CTCTTC 2 cut(s) 255, 260
EarI CTCTTC 2 cut(s) 255, 260
EciI GGCGGA 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 1 cut(s) 425
FaiI YATR 8 cut(s) 116, 220, 356, 364, 366, 423, 446, 501
FaqI GGGAC 1 cut(s) 454
FatI CATG 1 cut(s) 421
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 6, 49
HaeII RGCGCY 2 cut(s) 8, 51
HaeIII GGCC 2 cut(s) 23, 160
HgaI GACGC 1 cut(s) 308
HhaI GCGC 2 cut(s) 7, 50
Hin1I GRCGYC 2 cut(s) 5, 42
Hin1II CATG 1 cut(s) 425
Hin6I GCGC 2 cut(s) 5, 48
HinP1I GCGC 2 cut(s) 5, 48
HphI GGTGA 2 cut(s) 250, 407
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 325
Hpy99I CGWCG 3 cut(s) 44, 56, 59
HpyAV CCTTC 3 cut(s) 34, 139, 177
HpyCH4III ACNGT 2 cut(s) 31, 405
HpyCH4IV ACGT 2 cut(s) 42, 57
HpyCH4V TGCA 4 cut(s) 264, 272, 428, 434
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 223, 376, 385, 422, 425, 431
HpyF3I CTNAG 4 cut(s) 17, 147, 153, 284
HpySE526I ACGT 2 cut(s) 42, 57
Hsp92I GRCGYC 2 cut(s) 5, 42
Hsp92II CATG 1 cut(s) 425
HspAI GCGC 2 cut(s) 5, 48
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 196, 327, 490
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 5 cut(s) 247, 274, 374, 378, 483
Lsp1109I GCAGC 6 cut(s) 25, 201, 256, 412, 418, 440
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 42, 57
MalI GATC 3 cut(s) 198, 329, 492
MboI GATC 3 cut(s) 196, 327, 490
MboII GAAGA 3 cut(s) 129, 242, 247
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 91
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 5 cut(s) 12, 150, 204, 300, 306
MspA1I CMGCKG 2 cut(s) 16, 431
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 13, 223, 376, 385, 422, 425, 431
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 196, 327, 490
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 303
NspI RCATGY 1 cut(s) 425
PaqCI CACCTGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PluTI GGCGCC 1 cut(s) 8
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 21
PstI CTGCAG 2 cut(s) 430, 436
PvuII CAGCTG 2 cut(s) 16, 431
SacI GAGCTC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 196, 327, 490
Sau96I GGNCC 1 cut(s) 21
SduI GDGCHC 1 cut(s) 39
SetI ASST 9 cut(s) 18, 39, 45, 60, 75, 108, 169, 263, 433
SfcI CTRYAG 2 cut(s) 426, 432
SfoI GGCGCC 1 cut(s) 6
Sse9I AATT 1 cut(s) 91
SsiI CCGC 6 cut(s) 8, 11, 161, 224, 302, 416
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 31, 405
TaiI ACGT 2 cut(s) 45, 60
TaqI TCGA 3 cut(s) 39, 318, 493
TasI AATT 1 cut(s) 91
TauI GCSGC 4 cut(s) 10, 13, 163, 419
TscAI CASTG 4 cut(s) 34, 244, 271, 279
TseI GCWGC 6 cut(s) 13, 214, 269, 425, 428, 431
TspDTI ATGAA 3 cut(s) 96, 121, 159
TspRI CASTG 4 cut(s) 34, 244, 271, 279
XapI RAATTY 1 cut(s) 91
XceI RCATGY 1 cut(s) 425
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.