Prupe.1G069400_v2.0.a1

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
4935374 .. 4940393
5020 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G069400.1

Sequence Viewer

Length: 1299 bp
ATGGAGGTACAGACATGTGGTAAGCCCATTGACTCGTTGCTCGAGAAGGTGCTCTGTATGAACATTCTATCTTCGGACTACTTCAAAGAGCTTTACCGGTTAAAGACCTACCATGAAGTTATTGATGAAATTTACAACCAAGTAGACCACGTTGAGCCATGGATGACCGGGAATTGCCGGGGGCCGTCCACCGCTTTCTGTCTGCTTTACAAGTTTTTCACCATGAAGCTCACCGTTAAGCAAATGCACGGTCTCTTAAAGCATGAAGACTCTCCTTACATAAGAGCGGTTGGGTTCCTCTACTTGAGATATGCTGCAGACCCGAAGACTCTGTGGAATTGGGTTGAACCCTACATTAAAGATGAGGAGGAATTCTCTCCTGGTTCCAATGGACGAACAACAACTATGGGTGTATATGTGCGCGATTTGCTTCTTGGACAGTACTATTTTGATACCCTTTTCCCCCGTATCCCTGTTCCTGTGTTGCGTCAGATTGTAGCTCATCTGGAGAAGATGAAACTCCCCACTAAACTTTCTGGCATTACAGGGGAAGCTACCCGTCATGGATCTGATGACACAGCCCGACGCCCACCTTCTGTGAAAGCGGCACTTTCAGTTTCCTTTGGTCAACGTGCCCCACATCGTGCTTCAACAAGGGACTCATCACCTGTTCGTCGTACGTTACCGCCACCACCACCTTATGACAAAGCCAGCAGTGATGATCTACGGACCCATCGCAGCCAGAGCCGTGAGTATTCTGACAGAGAATATTTGGACAGGGACAGGGACAGGGACAGAGGAAGGGACCGGGATCGGAATCGAGAAAGAGAAAGAGAAAGGGATAGTGATCGGGATCGAGAAAGATACAAGGAACGGGAGCGGGATCGAGACAGAGACAGAGCAAGGGAGAGAGTTAGGGATAAGGAAAGGGAGCGAGAGAAAGATAGAGAACGCAGTTCTGATTATGATCGGAGGTCCAAATATACAGAGAGAGATAGCCGAAGAGACCAATATGAGAGTAGCCGTGATGGCGGTAGACATTACCGTAGGAGTAGGAGTCGGAGCCGCAGTAGGAGCAGGAGTAGAAGTAGGAGCTTGCAAGCTGGCGCTGCACTTCGTTCGAGTCCACAAAGAGATGTAAACAAGGATAGAACATCTGCATCTAGCAATCTGGCAAAACTTAGGGATCTTTATGGTGATATAAGTGAACAAAAAGGGGATGCTAGTATGGATAGGATTTCCAGGATTGACAATGGTGGTGAAGAGGTGATTAGACTTGGTGGTTCTCGATGGAAATAG

Protein Analysis

433

Amino Acids

50.9

Weight (kDa)

9.73

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 287, 880
AccI GTMKAC 2 cut(s) 144, 1036
AccII CGCG 1 cut(s) 423
AciI CCGC 7 cut(s) 192, 287, 605, 686, 880, 1032, 1066
AclWI GGATC 5 cut(s) 574, 819, 861, 891, 1194
AcsI RAATTY 2 cut(s) 129, 371
AcyI GRCGYC 1 cut(s) 586
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 3 cut(s) 9, 443, 679
AflIII ACRYGT 1 cut(s) 14
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 85, 347, 651
AjnI CCWGG 2 cut(s) 379, 1241
AluBI AGCT 6 cut(s) 91, 229, 500, 554, 1095, 1103
AluI AGCT 6 cut(s) 91, 229, 500, 554, 1095, 1103
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 4 cut(s) 257, 882, 888, 999
AlwI GGATC 5 cut(s) 574, 819, 861, 891, 1194
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 314, 738, 1109
ApoI RAATTY 2 cut(s) 129, 371
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AsiGI ACCGGT 1 cut(s) 96
AspLEI GCGC 2 cut(s) 423, 1109
AspS9I GGNCC 4 cut(s) 182, 729, 805, 975
AsuC2I CCSGG 3 cut(s) 169, 179, 809
AsuHPI GGTGA 6 cut(s) 211, 223, 657, 1208, 1271, 1279
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 3 cut(s) 729, 805, 975
BaeGI GKGCMC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 273, 332
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 301, 750, 1096
BccI CCATC 3 cut(s) 741, 1022, 1284
BceAI ACGGC 3 cut(s) 169, 732, 1008
BcgI CGANNNNNNTGC 2 cut(s) 1101, 1135
BciT130I CCWGG 2 cut(s) 381, 1243
BciVI GTATCC 1 cut(s) 479
BcnI CCSGG 3 cut(s) 169, 179, 809
BcoDI GTCTC 4 cut(s) 257, 882, 888, 999
BfaI CTAG 2 cut(s) 1164, 1224
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 1110
BfuI GTATCC 1 cut(s) 479
BglI GCCNNNNNGGC 1 cut(s) 1029
BisI GCNGC 5 cut(s) 315, 606, 739, 1066, 1110
BlsI GCNGC 5 cut(s) 316, 607, 740, 1067, 1111
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 5 cut(s) 169, 179, 381, 809, 1243
Bme18I GGWCC 3 cut(s) 729, 805, 975
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 4 cut(s) 182, 729, 805, 975
BmiI GGNNCC 6 cut(s) 183, 296, 385, 731, 806, 1064
BmrFI CCNGG 5 cut(s) 169, 179, 381, 809, 1243
BmsI GCATC 2 cut(s) 1169, 1210
BpiI GAAGAC 2 cut(s) 273, 332
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 3 cut(s) 169, 179, 809
BsaBI GATNNNNATC 4 cut(s) 816, 846, 852, 966
BsaHI GRCGYC 1 cut(s) 586
BsaI GGTCTC 2 cut(s) 257, 999
BsaJI CCNNGG 2 cut(s) 158, 178
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 8 cut(s) 1042, 1054, 1066, 1072, 1072, 1084, 1096, 1102
Bse118I RCCGGY 1 cut(s) 96
Bse8I GATNNNNATC 4 cut(s) 816, 846, 852, 966
BseBI CCWGG 2 cut(s) 381, 1243
BseDI CCNNGG 2 cut(s) 158, 178
BseGI GGATG 2 cut(s) 168, 1225
BseJI GATNNNNATC 4 cut(s) 816, 846, 852, 966
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 3 cut(s) 301, 750, 1096
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 97, 168, 178, 808
BsiWI CGTACG 1 cut(s) 677
BslFI GGGAC 5 cut(s) 671, 794, 800, 806, 818
BsmAI GTCTC 4 cut(s) 257, 882, 888, 999
BsmFI GGGAC 5 cut(s) 671, 794, 800, 806, 818
BsnI GGCC 1 cut(s) 184
Bso31I GGTCTC 2 cut(s) 257, 999
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 54, 637
Bsp143I GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 7 cut(s) 192, 287, 605, 686, 880, 1032, 1066
BspANI GGCC 1 cut(s) 184
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 6 cut(s) 183, 296, 385, 731, 806, 1064
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 5 cut(s) 574, 819, 861, 891, 1194
BspTNI GGTCTC 2 cut(s) 257, 999
BsrBI CCGCTC 2 cut(s) 287, 880
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 158, 178
BssMI GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 381, 1243
Bst4CI ACNGT 4 cut(s) 235, 251, 441, 1046
Bst6I CTCTTC 2 cut(s) 997, 1257
BstACI GRCGYC 1 cut(s) 586
BstC8I GCNNGC 4 cut(s) 712, 1097, 1101, 1105
BstDEI CTNAG 1 cut(s) 1181
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 168, 1225
BstFNI CGCG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 1110
BstHHI GCGC 2 cut(s) 423, 1109
BstKTI GATC 8 cut(s) 569, 724, 814, 850, 856, 886, 970, 1189
BstMAI GTCTC 4 cut(s) 257, 882, 888, 999
BstMBI GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
BstMWI GCNNNNNNNGC 5 cut(s) 427, 744, 1029, 1074, 1109
BstNI CCWGG 2 cut(s) 381, 1243
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 5 cut(s) 167, 177, 379, 807, 1241
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 301, 750, 1096
BstV2I GAAGAC 2 cut(s) 273, 332
BstX2I RGATCY 2 cut(s) 566, 1186
BstYI RGATCY 2 cut(s) 566, 1186
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 2 cut(s) 168, 1225
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 4 cut(s) 712, 1097, 1101, 1105
CfoI GCGC 2 cut(s) 423, 1109
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 182, 729, 805, 975
CseI GACGC 2 cut(s) 476, 594
Csp6I GTAC 3 cut(s) 8, 442, 678
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 6 cut(s) 15, 113, 159, 223, 263, 563
CviQI GTAC 3 cut(s) 8, 442, 678
DdeI CTNAG 1 cut(s) 1181
DpnI GATC 8 cut(s) 568, 723, 813, 849, 855, 885, 969, 1188
DpnII GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
DraIII CACNNNGTG 1 cut(s) 644
Eam1104I CTCTTC 2 cut(s) 997, 1257
EarI CTCTTC 2 cut(s) 997, 1257
Eco130I CCWWGG 1 cut(s) 158
Eco31I GGTCTC 2 cut(s) 257, 999
Eco47I GGWCC 3 cut(s) 729, 805, 975
Eco88I CYCGRG 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 379, 1241
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 6 cut(s) 18, 116, 162, 226, 266, 566
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 5 cut(s) 671, 794, 800, 806, 818
FatI CATG 6 cut(s) 14, 112, 158, 222, 262, 562
FauI CCCGC 1 cut(s) 873
FblI GTMKAC 2 cut(s) 144, 1036
Fnu4HI GCNGC 5 cut(s) 315, 606, 739, 1066, 1110
FokI GGATG 2 cut(s) 175, 1232
Fsp4HI GCNGC 5 cut(s) 315, 606, 739, 1066, 1110
FspBI CTAG 2 cut(s) 1164, 1224
GlaI GCGC 2 cut(s) 422, 1108
GluI GCNGC 5 cut(s) 315, 606, 739, 1066, 1110
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 1110
HaeIII GGCC 1 cut(s) 184
HapII CCGG 4 cut(s) 97, 168, 178, 808
HgaI GACGC 2 cut(s) 476, 594
HhaI GCGC 2 cut(s) 423, 1109
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 6 cut(s) 18, 116, 162, 226, 266, 566
Hin6I GCGC 2 cut(s) 421, 1107
HinP1I GCGC 2 cut(s) 421, 1107
HincII GTYRAC 1 cut(s) 629
HindII GTYRAC 1 cut(s) 629
HinfI GANTC 7 cut(s) 32, 269, 328, 659, 817, 1057, 1123
HpaII CCGG 4 cut(s) 97, 168, 178, 808
HphI GGTGA 6 cut(s) 211, 223, 657, 1208, 1271, 1279
Hpy166II GTNNAC 7 cut(s) 145, 189, 629, 1037, 1127, 1141, 1208
Hpy188I TCNGA 8 cut(s) 76, 492, 571, 760, 816, 961, 972, 1062
Hpy188III TCNNGA 7 cut(s) 43, 506, 821, 851, 857, 887, 1287
Hpy8I GTNNAC 7 cut(s) 145, 189, 629, 1037, 1127, 1141, 1208
Hpy99I CGWCG 2 cut(s) 588, 678
HpyAV CCTTC 3 cut(s) 40, 603, 795
HpyCH4III ACNGT 4 cut(s) 235, 251, 441, 1046
HpyCH4IV ACGT 3 cut(s) 150, 631, 680
HpyCH4V TGCA 5 cut(s) 247, 317, 1099, 1112, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 427, 744, 1029, 1074, 1109
HpyF3I CTNAG 1 cut(s) 1181
HpySE526I ACGT 3 cut(s) 150, 631, 680
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 6 cut(s) 18, 116, 162, 226, 266, 566
HspAI GCGC 2 cut(s) 421, 1107
Kzo9I GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
LmnI GCTCC 5 cut(s) 877, 931, 1062, 1074, 1092
Lsp1109I GCAGC 3 cut(s) 301, 750, 1096
LweI GCATC 2 cut(s) 1169, 1210
MaeI CTAG 2 cut(s) 1164, 1224
MaeII ACGT 3 cut(s) 150, 631, 680
MaeIII GTNAC 1 cut(s) 681
MalI GATC 8 cut(s) 568, 723, 813, 849, 855, 885, 969, 1188
MbiI CCGCTC 2 cut(s) 287, 880
MboI GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
MboII GAAGA 6 cut(s) 63, 278, 337, 523, 1014, 1274
MflI RGATCY 2 cut(s) 566, 1186
MhlI GDGCHC 2 cut(s) 54, 637
MluCI AATT 4 cut(s) 129, 172, 337, 371
MlyI GAGTC 6 cut(s) 26, 263, 322, 653, 1066, 1132
MmeI TCCRAC 1 cut(s) 1040
MnlI CCTC 6 cut(s) 308, 358, 361, 791, 966, 1258
MseI TTAA 4 cut(s) 101, 237, 257, 357
MspI CCGG 4 cut(s) 97, 168, 178, 808
MspR9I CCNGG 5 cut(s) 169, 179, 381, 809, 1243
MvaI CCWGG 2 cut(s) 381, 1243
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 5 cut(s) 427, 744, 1029, 1074, 1109
NciI CCSGG 3 cut(s) 169, 179, 809
NcoI CCATGG 1 cut(s) 158
NdeII GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
NlaIII CATG 6 cut(s) 18, 116, 162, 226, 266, 566
NlaIV GGNNCC 6 cut(s) 183, 296, 385, 731, 806, 1064
NspI RCATGY 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 41
PciI ACATGT 1 cut(s) 14
PfeI GAWTC 1 cut(s) 817
Pfl23II CGTACG 1 cut(s) 677
PfoI TCCNGGA 1 cut(s) 1241
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 5 cut(s) 316, 607, 740, 1067, 1111
PleI GAGTC 6 cut(s) 26, 263, 322, 653, 1065, 1131
PpsI GAGTC 6 cut(s) 26, 263, 322, 653, 1065, 1131
PscI ACATGT 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 379, 1241
PspGI CCWGG 2 cut(s) 379, 1241
PspLI CGTACG 1 cut(s) 677
PspN4I GGNNCC 6 cut(s) 183, 296, 385, 731, 806, 1064
PspPI GGNCC 4 cut(s) 182, 729, 805, 975
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 2 cut(s) 566, 1186
RsaI GTAC 3 cut(s) 9, 443, 679
RsaNI GTAC 3 cut(s) 8, 442, 678
SaqAI TTAA 4 cut(s) 101, 237, 257, 357
SatI GCNGC 5 cut(s) 315, 606, 739, 1066, 1110
Sau3AI GATC 8 cut(s) 566, 721, 811, 847, 853, 883, 967, 1186
Sau96I GGNCC 4 cut(s) 182, 729, 805, 975
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 6 cut(s) 26, 263, 322, 653, 1066, 1132
ScrFI CCNGG 5 cut(s) 169, 179, 381, 809, 1243
SduI GDGCHC 2 cut(s) 54, 637
SfaNI GCATC 2 cut(s) 1169, 1210
SfcI CTRYAG 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 3 cut(s) 729, 805, 975
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 41, 304
SmoI CTYRAG 2 cut(s) 41, 304
Sse9I AATT 4 cut(s) 129, 172, 337, 371
SsiI CCGC 7 cut(s) 192, 287, 605, 686, 880, 1032, 1066
SspI AATATT 1 cut(s) 770
SspMI CTAG 2 cut(s) 1164, 1224
StyD4I CCNGG 5 cut(s) 167, 177, 379, 807, 1241
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 4 cut(s) 235, 251, 441, 1046
TaiI ACGT 3 cut(s) 153, 634, 683
TaqI TCGA 6 cut(s) 42, 820, 856, 886, 1121, 1288
TasI AATT 4 cut(s) 129, 172, 337, 371
TatI WGTACW 1 cut(s) 441
TauI GCSGC 2 cut(s) 608, 1068
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 4 cut(s) 101, 237, 257, 357
Tru9I TTAA 4 cut(s) 101, 237, 257, 357
TscAI CASTG 1 cut(s) 721
TseI GCWGC 3 cut(s) 314, 738, 1109
TspDTI ATGAA 6 cut(s) 74, 129, 141, 239, 279, 530
TspGWI ACGGA 1 cut(s) 742
TspRI CASTG 1 cut(s) 721
VpaK11BI GGWCC 3 cut(s) 729, 805, 975
XapI RAATTY 2 cut(s) 129, 371
XceI RCATGY 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 144, 1036
XspI CTAG 2 cut(s) 1164, 1224
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.