Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Reverse (-)

38472240 .. 38473082

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTAAACCTAATCAATCACTCTCTCAGCCTTCATTTCTTCCCAAACTGAGACTGAGAGGCCGCCTCCTTCATTATCAGTCCTTTTTTATCAAACCCGATTTGAACCGAGAGAGGCCGCCAAATCCGCCAACGCCCAGCACTCAACGCCGAGACTGGTCTCTCTCTCTCTCTCTTCTCTTCACCTGCACTGCTGCACGGCCGAGACTGCCGCTTTCAATCTTCTCCTCTGCCAACGCCGTGACTCGAAGACGTGGGGAGGCTAAGAGGACGCGCAAACGCGGGGAGGCTGAGAGAACTCGCAGACGCGGGGAGGCTGAGAGAACTCACAGACGGGGGGAGGCTGAGAGAACGCGCAGACGCGGAGAGGCAGAGGCTCGAAATCCCGATCTGCTTTGTTCAGTTGTTTGGACTAGAATCAGGCCGGCTGGTGAGCCACTGTCTCCGAGGGCGGCGCACGTCGCAGCTGCAGTGGGGACTATGGTGGTTTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

166

Amino Acids

18.89

Weight (kDa)

11.86

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccII	CGCG	5 cut(s)	274, 282, 309, 355, 363
AciI	CCGC	8 cut(s)	64, 119, 128, 212, 282, 309, 363, 452
AcoI	YGGCCR	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	106, 219
AjiI	CACGTC	2 cut(s)	254, 460
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw26I	GTCTC	5 cut(s)	46, 147, 165, 199, 447
AoxI	GGCC	4 cut(s)	61, 116, 200, 422
ApeKI	GCWGC	3 cut(s)	194, 464, 467
AspLEI	GCGC	3 cut(s)	276, 357, 457
AsuHPI	GGTGA	2 cut(s)	175, 443
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	181, 454, 476
BceAI	ACGGC	2 cut(s)	215, 224
BcoDI	GTCTC	5 cut(s)	46, 147, 165, 199, 447
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	7 cut(s)	64, 119, 195, 212, 453, 465, 468
BlsI	GCNGC	7 cut(s)	65, 120, 196, 213, 454, 466, 469
BmgBI	CACGTC	2 cut(s)	254, 460
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	446
BseMII	CTCAG	6 cut(s)	41, 41, 47, 282, 309, 336
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	181, 454, 476
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	2 cut(s)	172, 180
Bsh1236I	CGCG	5 cut(s)	274, 282, 309, 355, 363
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	4 cut(s)	63, 118, 202, 424
BsiEI	CGRYCG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	5 cut(s)	46, 147, 165, 199, 447
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	4 cut(s)	63, 118, 202, 424
Bso31I	GGTCTC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	8 cut(s)	64, 119, 128, 212, 282, 309, 363, 452
BspANI	GGCC	4 cut(s)	63, 118, 202, 424
BspCNI	CTCAG	6 cut(s)	40, 42, 48, 283, 310, 337
BspFNI	CGCG	5 cut(s)	274, 282, 309, 355, 363
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	180, 185
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	7 cut(s)	27, 50, 56, 264, 291, 318, 345
BstFNI	CGCG	5 cut(s)	274, 282, 309, 355, 363
BstHHI	GCGC	3 cut(s)	276, 357, 457
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	5 cut(s)	46, 147, 165, 199, 447
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 147, 208, 461
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	5 cut(s)	274, 282, 309, 355, 363
BstV1I	GCAGC	3 cut(s)	181, 454, 476
BstV2I	GAAGAC	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	63, 118, 202, 424
BtrI	CACGTC	2 cut(s)	254, 460
BtsI	GCAGTG	2 cut(s)	189, 477
BtsIMutI	CAGTG	3 cut(s)	189, 437, 477
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	3 cut(s)	276, 357, 457
Cfr10I	RCCGGY	1 cut(s)	424
CseI	GACGC	3 cut(s)	280, 315, 369
DdeI	CTNAG	7 cut(s)	27, 50, 56, 264, 291, 318, 345
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	200
EagI	CGGCCG	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	180, 185
EarI	CTCTTC	2 cut(s)	180, 185
EciI	GGCGGA	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	165
Eco52I	CGGCCG	1 cut(s)	200
FaiI	YATR	1 cut(s)	482
FaqI	GGGAC	1 cut(s)	490
FauI	CCCGC	2 cut(s)	275, 302
Fnu4HI	GCNGC	7 cut(s)	64, 119, 195, 212, 453, 465, 468
Fsp4HI	GCNGC	7 cut(s)	64, 119, 195, 212, 453, 465, 468
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	3 cut(s)	275, 356, 456
GluI	GCNGC	7 cut(s)	64, 119, 195, 212, 453, 465, 468
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	63, 118, 202, 424
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	3 cut(s)	280, 315, 369
HhaI	GCGC	3 cut(s)	276, 357, 457
Hin6I	GCGC	3 cut(s)	274, 355, 455
HinP1I	GCGC	3 cut(s)	274, 355, 455
HinfI	GANTC	2 cut(s)	244, 417
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	175, 443
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	42, 80
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	2 cut(s)	253, 459
HpyCH4V	TGCA	3 cut(s)	189, 197, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 147, 208, 461
HpyF3I	CTNAG	7 cut(s)	27, 50, 56, 264, 291, 318, 345
HpySE526I	ACGT	2 cut(s)	253, 459
HspAI	GCGC	3 cut(s)	274, 355, 455
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	6 cut(s)	142, 151, 199, 406, 414, 438
Lsp1109I	GCAGC	3 cut(s)	181, 454, 476
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	2 cut(s)	253, 459
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	32, 167, 172, 214, 261
MlyI	GAGTC	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	424
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	425
MvnI	CGCG	5 cut(s)	274, 282, 309, 355, 363
MwoI	GCNNNNNNNGC	4 cut(s)	127, 147, 208, 461
NaeI	GCCGGC	1 cut(s)	426
NdeII	GATC	1 cut(s)	388
NgoMIV	GCCGGC	1 cut(s)	424
NmeAIII	GCCGAG	2 cut(s)	176, 228
NmuCI	GTSAC	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	7 cut(s)	65, 120, 196, 213, 454, 466, 469
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	467
SatI	GCNGC	7 cut(s)	64, 119, 195, 212, 453, 465, 468
Sau3AI	GATC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	238
SetI	ASST	6 cut(s)	13, 188, 256, 462, 469, 497
SfcI	CTRYAG	1 cut(s)	468
SsiI	CCGC	8 cut(s)	64, 119, 128, 212, 282, 309, 363, 452
SspMI	CTAG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	2 cut(s)	256, 462
TaqI	TCGA	2 cut(s)	247, 379
TauI	GCSGC	4 cut(s)	66, 121, 214, 455
TfiI	GAWTC	1 cut(s)	417
TscAI	CASTG	3 cut(s)	196, 444, 477
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	194, 464, 467
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	24, 62
TspRI	CASTG	3 cut(s)	196, 444, 477
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.