Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

52872359 .. 52876675

Gene Structure 4317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCCAATTTTCTCTTGTCTGAGATGGTTGAGATTTGTGGAGAGTCCGAACAGAGGGCTAGAGGATGGTGGAAGGGGCTGGGCGTCTTTGGATGGGCACAAGATCTCTGATTTCTTCTCTGTGCGCCCTTGGATCTGTATGCAAATCGGGGTAAGGCGCTTTGGTGGAAGAGATTTGATGGTGACAGATTGGAGGTCTCTTATGGCCGGCCTAGATCTAAGCTTGACCTGTTGGTGGGGCAGTCAACATTGGACAGTGCCTTCAGGTTCCAATGGACGAATGACCACTATGGGTGTATATGTACGTGATTTGCTACTTGGGCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

109

Amino Acids

12.41

Weight (kDa)

9.15

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	53, 234
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	204, 208
AspLEI	GCGC	2 cut(s)	126, 159
AsuHPI	GGTGA	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	99
BccI	CCATC	4 cut(s)	18, 59, 86, 172
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	59, 212
BfoI	RGCGCY	1 cut(s)	160
BglII	AGATCT	2 cut(s)	102, 214
BmiI	GGNNCC	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 234
Bse118I	RCCGGY	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	70, 97
BseLI	CCNNNNNNNGG	2 cut(s)	53, 234
BseMII	CTCAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	206, 210
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	53, 234
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	206, 210
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	102, 132, 214
BspANI	GGCC	2 cut(s)	206, 210
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	3 cut(s)	102, 132, 214
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	20, 218
BstF5I	GGATG	2 cut(s)	70, 97
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	126, 159
BstKTI	GATC	3 cut(s)	105, 135, 217
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	102, 132, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	99
BstX2I	RGATCY	3 cut(s)	102, 132, 214
BstYI	RGATCY	3 cut(s)	102, 132, 214
BsuRI	GGCC	2 cut(s)	206, 210
BtsCI	GGATG	2 cut(s)	70, 97
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	2 cut(s)	126, 159
Cfr10I	RCCGGY	1 cut(s)	206
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	302
CviJI	RGCY	5 cut(s)	58, 78, 206, 210, 222
CviKI_1	RGCY	5 cut(s)	58, 78, 206, 210, 222
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	20, 218
DpnI	GATC	3 cut(s)	104, 134, 216
DpnII	GATC	3 cut(s)	102, 132, 214
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaiI	YATR	5 cut(s)	140, 203, 290, 298, 300
FokI	GGATG	2 cut(s)	77, 104
FseI	GGCCGGCC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	59, 212
GlaI	GCGC	2 cut(s)	125, 158
GsaI	CCCAGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	206, 210
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	2 cut(s)	126, 159
Hin1I	GRCGYC	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	124, 157
HinP1I	GCGC	2 cut(s)	124, 157
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	21, 48, 109
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	66, 270
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	2 cut(s)	20, 218
HpySE526I	ACGT	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	83
HspAI	GCGC	2 cut(s)	124, 157
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	102, 132, 214
LpnPI	CCDG	4 cut(s)	64, 220, 241, 249
MaeI	CTAG	2 cut(s)	59, 212
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	104, 134, 216
MboI	GATC	3 cut(s)	102, 132, 214
MboII	GAAGA	2 cut(s)	106, 180
MflI	RGATCY	3 cut(s)	102, 132, 214
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	47, 55, 186
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	1 cut(s)	328
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	319
NaeI	GCCGGC	1 cut(s)	208
NdeII	GATC	3 cut(s)	102, 132, 214
NgoMIV	GCCGGC	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	102, 132, 214
RigI	GGCCGGCC	1 cut(s)	210
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	328
Sau3AI	GATC	3 cut(s)	102, 132, 214
SchI	GAGTC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	5 cut(s)	197, 224, 230, 268, 307
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	2 cut(s)	59, 212
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	307
TasI	AATT	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspRI	CASTG	1 cut(s)	261
XspI	CTAG	2 cut(s)	59, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.