PRP38 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 |
| fragaria_vesca | FvH4_4g06670 |
| malus_domestica | MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1 |
| prunus_persica | Prupe.1G069400_v2.0.a1 |
| pyrus_communis | pycom13g20990 pycom16g20310 |
| rosa_chinensis | RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101 |
| rosa_laevigata | RLG00000009343 RLG00000029418 |
| rosa_multiflora | Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00343540 |
| rosa_rugosa | Rorug04G0009400 Rorug04G0009400 Rorug04G0009400 |
| rosa_samantha | Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500 |
| rosa_wichuraiana | Rw2G046220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 69, 72 |
| AclWI | GGATC | 2 cut(s) | 101, 203 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcuI | CTGAAG | 1 cut(s) | 49 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AgsI | TTSAA | 1 cut(s) | 203 |
| AhlI | ACTAGT | 1 cut(s) | 76 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 85, 117 |
| AluBI | AGCT | 1 cut(s) | 194 |
| AluI | AGCT | 1 cut(s) | 194 |
| AlwI | GGATC | 2 cut(s) | 101, 203 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 165 |
| AsuHPI | GGTGA | 1 cut(s) | 42 |
| BalI | TGGCCA | 1 cut(s) | 173 |
| BbvI | GCAGC | 1 cut(s) | 177 |
| BccI | CCATC | 1 cut(s) | 190 |
| BcuI | ACTAGT | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BisI | GCNGC | 2 cut(s) | 70, 166 |
| BlsI | GCNGC | 2 cut(s) | 71, 167 |
| BmiI | GGNNCC | 1 cut(s) | 103 |
| BpmI | CTGGAG | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseMII | CTCAG | 1 cut(s) | 49 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseRI | GAGGAG | 2 cut(s) | 29, 32 |
| BseXI | GCAGC | 1 cut(s) | 177 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bsp143I | GATC | 3 cut(s) | 21, 93, 208 |
| BspACI | CCGC | 2 cut(s) | 69, 72 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspCNI | CTCAG | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 103 |
| BspPI | GGATC | 2 cut(s) | 101, 203 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssMI | GATC | 3 cut(s) | 21, 93, 208 |
| Bst4CI | ACNGT | 1 cut(s) | 28 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 163 |
| BstDEI | CTNAG | 1 cut(s) | 35 |
| BstKTI | GATC | 3 cut(s) | 24, 96, 211 |
| BstMBI | GATC | 3 cut(s) | 21, 93, 208 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 69, 145, 154 |
| BstV1I | GCAGC | 1 cut(s) | 177 |
| BstX2I | RGATCY | 1 cut(s) | 208 |
| BstYI | RGATCY | 1 cut(s) | 208 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtgZI | GCGATG | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 163 |
| CviAII | CATG | 1 cut(s) | 169 |
| CviJI | RGCY | 5 cut(s) | 40, 63, 161, 173, 194 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 63, 161, 173, 194 |
| DdeI | CTNAG | 1 cut(s) | 35 |
| DpnI | GATC | 3 cut(s) | 23, 95, 210 |
| DpnII | GATC | 3 cut(s) | 21, 93, 208 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| EciI | GGCGGA | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 1 cut(s) | 49 |
| FaeI | CATG | 1 cut(s) | 172 |
| FaiI | YATR | 4 cut(s) | 125, 133, 135, 170 |
| FatI | CATG | 1 cut(s) | 168 |
| Fnu4HI | GCNGC | 2 cut(s) | 70, 166 |
| Fsp4HI | GCNGC | 2 cut(s) | 70, 166 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GluI | GCNGC | 2 cut(s) | 70, 166 |
| GsuI | CTGGAG | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| Hin1II | CATG | 1 cut(s) | 172 |
| HphI | GGTGA | 1 cut(s) | 42 |
| Hpy188I | TCNGA | 2 cut(s) | 98, 213 |
| HpyAV | CCTTC | 1 cut(s) | 53 |
| HpyCH4III | ACNGT | 1 cut(s) | 28 |
| HpyCH4V | TGCA | 1 cut(s) | 165 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 69, 145, 154 |
| HpyF3I | CTNAG | 1 cut(s) | 35 |
| Hsp92II | CATG | 1 cut(s) | 172 |
| Kzo9I | GATC | 3 cut(s) | 21, 93, 208 |
| LmnI | GCTCC | 1 cut(s) | 199 |
| LpnPI | CCDG | 4 cut(s) | 22, 143, 210, 219 |
| Lsp1109I | GCAGC | 1 cut(s) | 177 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MaeIII | GTNAC | 1 cut(s) | 86 |
| MalI | GATC | 3 cut(s) | 23, 95, 210 |
| MboI | GATC | 3 cut(s) | 21, 93, 208 |
| MfeI | CAATTG | 1 cut(s) | 216 |
| MflI | RGATCY | 1 cut(s) | 208 |
| MlsI | TGGCCA | 1 cut(s) | 173 |
| MluCI | AATT | 1 cut(s) | 216 |
| MluNI | TGGCCA | 1 cut(s) | 173 |
| MnlI | CCTC | 3 cut(s) | 7, 10, 92 |
| Mox20I | TGGCCA | 1 cut(s) | 173 |
| MscI | TGGCCA | 1 cut(s) | 173 |
| Msp20I | TGGCCA | 1 cut(s) | 173 |
| MspA1I | CMGCKG | 1 cut(s) | 69 |
| MunI | CAATTG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 69, 145, 154 |
| NdeII | GATC | 3 cut(s) | 21, 93, 208 |
| NlaIII | CATG | 1 cut(s) | 172 |
| NlaIV | GGNNCC | 1 cut(s) | 103 |
| NmuCI | GTSAC | 1 cut(s) | 86 |
| PkrI | GCNGC | 2 cut(s) | 71, 167 |
| PspN4I | GGNNCC | 1 cut(s) | 103 |
| PsuI | RGATCY | 1 cut(s) | 208 |
| SatI | GCNGC | 2 cut(s) | 70, 166 |
| Sau3AI | GATC | 3 cut(s) | 21, 93, 208 |
| SetI | ASST | 2 cut(s) | 103, 196 |
| SmlI | CTYRAG | 1 cut(s) | 41 |
| SmoI | CTYRAG | 1 cut(s) | 41 |
| SpeI | ACTAGT | 1 cut(s) | 76 |
| Sse9I | AATT | 1 cut(s) | 216 |
| SsiI | CCGC | 2 cut(s) | 69, 72 |
| SspMI | CTAG | 1 cut(s) | 77 |
| TaaI | ACNGT | 1 cut(s) | 28 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 1 cut(s) | 216 |
| TauI | GCSGC | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 86 |
| TseI | GCWGC | 1 cut(s) | 165 |
| Tsp45I | GTSAC | 1 cut(s) | 86 |
| XspI | CTAG | 1 cut(s) | 77 |