Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002200

Physical Location & Seq

Genomic Coordinates Forward (+)

18065625 .. 18069428

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGGTACAGACATGTGGGAAATCCATTGACTCATTGCTCGAGAAGGTGCTTTGTATGAACGTTCTATCTTCCGACTACTTCAAGGAACTTTACCGGTTAAAGACGTACCATGAAGTCATTGATGAAATTTACAACCAAGTAGACCATGTCGAGCCGTGGATGACCGGGAATTGCCGCGGCCCGTCAACTGCCTTCTGTCTGCTGTACAAGTTCTTCACCATGAAGCTCACCATTAAGCAAATGCACGGTCTTTTAAAGCACGAGGATTCGCCCTACATAAGAGCGGTGGGTTTCCTCTACTTGAGATATGCTGCAGACCCAAAAACTTTGTGGAATTGGGTTGAACCCTATATTAAAGATGACGAGGAATTTTCTCCTGGTTCCAATGGACGGATGACAACTATGGGTGTATACGTGCGTGATTTGCTGCTTGGGCAGTACTATTTTGATACCCTTTTCCCCCGCATCCCTGTTCCTGTTATGCGGCAGATTGTAGCTAATCTTGAGAAGATGAAACTCCCCACCAAACTATCTGGTATTACTGGAGAGGCTACCCGCCATGGATCTGATGACACAGCTCGTCGCCCACCTTCTGTGAAAGCTGCTCTTTCAGTTTCCTTTGGTCAACGTGCTCCACATCGTGCTTCAACAAGGGACTCCTCACCTGTTCGTCGCACCTTACCACCACCACCTTATGATAAAGCCAGTAGTGATGATCAAAGGACCCGTTGCAGTCAGAGCCGTGAATATTCTGACAGAGAATATTCAGACAGGGACAGAGGAAGGGACCGTGATCGCAATCGGGATAGGGACAGTGATCGATCGATACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0010226 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

279

Amino Acids

32.24

Weight (kDa)

8.97

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	6 - 163	3.7e-51	PRP38 family
PRP38_assoc	PF12871	177 - 273	5.7e-11	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370 AT5G37370
fragaria_vesca	FvH4_4g06670
malus_domestica	MD01G1153700.v1.1 MD13G1237000.v1.1 MD16G1242400.v1.1
prunus_persica	Prupe.1G069400_v2.0.a1
pyrus_communis	pycom13g20990 pycom16g20310
rosa_chinensis	RchiOBHm_Chr4g0398571 RchiOBHm_Chr7g0213101
rosa_laevigata	RLG00000009343 RLG00000029418
rosa_multiflora	Rmu_sc0000990.1_g000015 Rmu_sc0005217.1_g000008 Rmu_sc0037096.1_g000001 Rmu_sc0042611.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343540
rosa_rugosa	Rorug04G0009400 Rorug04G0009400 Rorug04G0009400
rosa_samantha	Rh2CG542000 Rh2CG542400 Rh2DG581100 Rh2DG581300 Rh3CG285800 Rh4AG087400 Rh4BG084000 Rh4CG095600 Rh4DG078900 Rh5DG096400 Rh6BG299500
rosa_wichuraiana	Rw2G046220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccI	GTMKAC	2 cut(s)	144, 414
AccII	CGCG	1 cut(s)	180
AciI	CCGC	6 cut(s)	178, 180, 287, 466, 487, 559
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	129, 371
AdeI	CACNNNGTG	1 cut(s)	644
AfaI	GTAC	4 cut(s)	9, 110, 209, 443
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	85, 347, 651
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	229, 500, 581, 605
AluI	AGCT	4 cut(s)	229, 500, 581, 605
Alw21I	GWGCWC	1 cut(s)	637
AlwI	GGATC	1 cut(s)	574
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	314, 430, 605
ApoI	RAATTY	2 cut(s)	129, 371
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	182, 726, 790
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	211, 223, 657
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	726, 790
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	3 cut(s)	301, 417, 592
BceAI	ACGGC	2 cut(s)	142, 729
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	6 cut(s)	178, 181, 315, 431, 488, 606
BlsI	GCNGC	6 cut(s)	179, 182, 316, 432, 489, 607
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	169, 381
Bme18I	GGWCC	2 cut(s)	726, 790
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	182, 726, 790
BmiI	GGNNCC	3 cut(s)	385, 728, 791
BmrFI	CCNGG	2 cut(s)	169, 381
BmsI	GCATC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	325, 527
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	2 cut(s)	823, 827
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	158, 178, 562
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	550, 708
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	2 cut(s)	823, 827
BseDI	CCNNGG	3 cut(s)	158, 178, 562
BseGI	GGATG	3 cut(s)	168, 402, 468
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	550, 708
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	3 cut(s)	301, 417, 592
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	827
BshFI	GGCC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	96
BshVI	ATCGAT	2 cut(s)	823, 827
BsiEI	CGRYCG	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	97, 168
BslFI	GGGAC	4 cut(s)	671, 791, 803, 827
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmFI	GGGAC	4 cut(s)	671, 791, 803, 827
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	566, 718, 796, 820, 824
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	6 cut(s)	178, 180, 287, 466, 487, 559
BspANI	GGCC	1 cut(s)	183
BspDI	ATCGAT	2 cut(s)	823, 827
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	385, 728, 791
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	550, 708
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	158, 178, 562
BssMI	GATC	5 cut(s)	566, 718, 796, 820, 824
BssNAI	GTATAC	1 cut(s)	415
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	251, 794, 818, 834
BstAUI	TGTACA	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	418
BstDSI	CCRYGG	3 cut(s)	158, 178, 562
BstF5I	GGATG	3 cut(s)	168, 402, 468
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	569, 721, 799, 823, 827
BstMBI	GATC	5 cut(s)	566, 718, 796, 820, 824
BstMCI	CGRYCG	1 cut(s)	827
BstMWI	GCNNNNNNNGC	3 cut(s)	427, 436, 741
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	167, 379
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	301, 417, 592
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BstZ17I	GTATAC	1 cut(s)	415
Bsu15I	ATCGAT	2 cut(s)	823, 827
BsuRI	GGCC	1 cut(s)	183
BsuTUI	ATCGAT	2 cut(s)	823, 827
BtgI	CCRYGG	3 cut(s)	158, 178, 562
BtsCI	GGATG	3 cut(s)	168, 402, 468
BtsIMutI	CAGTG	1 cut(s)	823
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	182, 726, 790
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	2 cut(s)	823, 827
Csp6I	GTAC	4 cut(s)	8, 109, 208, 442
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	5 cut(s)	15, 113, 149, 223, 563
CviJI	RGCY	9 cut(s)	157, 183, 229, 500, 554, 581, 605, 707, 744
CviKI_1	RGCY	9 cut(s)	157, 183, 229, 500, 554, 581, 605, 707, 744
CviQI	GTAC	4 cut(s)	8, 109, 208, 442
DpnI	GATC	5 cut(s)	568, 720, 798, 822, 826
DpnII	GATC	5 cut(s)	566, 718, 796, 820, 824
DraI	TTTAAA	1 cut(s)	258
DraIII	CACNNNGTG	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	726, 790
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	5 cut(s)	18, 116, 152, 226, 566
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	4 cut(s)	671, 791, 803, 827
FatI	CATG	5 cut(s)	14, 112, 148, 222, 562
FauI	CCCGC	2 cut(s)	473, 566
FbaI	TGATCA	1 cut(s)	718
FblI	GTMKAC	2 cut(s)	144, 414
Fnu4HI	GCNGC	6 cut(s)	178, 181, 315, 431, 488, 606
FokI	GGATG	3 cut(s)	175, 409, 455
Fsp4HI	GCNGC	6 cut(s)	178, 181, 315, 431, 488, 606
GluI	GCNGC	6 cut(s)	178, 181, 315, 431, 488, 606
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	97, 168
Hin1II	CATG	5 cut(s)	18, 116, 152, 226, 566
HincII	GTYRAC	2 cut(s)	189, 629
HindII	GTYRAC	2 cut(s)	189, 629
HinfI	GANTC	3 cut(s)	32, 269, 659
HpaII	CCGG	2 cut(s)	97, 168
HphI	GGTGA	3 cut(s)	211, 223, 657
Hpy166II	GTNNAC	4 cut(s)	145, 189, 415, 629
Hpy188I	TCNGA	5 cut(s)	76, 571, 741, 757, 772
Hpy188III	TCNNGA	3 cut(s)	43, 506, 806
Hpy8I	GTNNAC	4 cut(s)	145, 189, 415, 629
Hpy99I	CGWCG	2 cut(s)	588, 678
HpyAV	CCTTC	4 cut(s)	40, 205, 603, 780
HpyCH4III	ACNGT	4 cut(s)	251, 794, 818, 834
HpyCH4IV	ACGT	4 cut(s)	63, 107, 417, 631
HpyCH4V	TGCA	3 cut(s)	247, 317, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	427, 436, 741
HpySE526I	ACGT	4 cut(s)	63, 107, 417, 631
Hsp92II	CATG	5 cut(s)	18, 116, 152, 226, 566
Ksp22I	TGATCA	1 cut(s)	718
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	566, 718, 796, 820, 824
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	301, 417, 592
LweI	GCATC	1 cut(s)	477
MaeII	ACGT	4 cut(s)	63, 107, 417, 631
MalI	GATC	5 cut(s)	568, 720, 798, 822, 826
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	5 cut(s)	566, 718, 796, 820, 824
MboII	GAAGA	3 cut(s)	63, 208, 523
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	4 cut(s)	129, 172, 337, 371
MlyI	GAGTC	2 cut(s)	26, 653
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	259, 308, 361, 544, 673, 776
MseI	TTAA	4 cut(s)	101, 237, 257, 357
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	97, 168
MspR9I	CCNGG	2 cut(s)	169, 381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	427, 436, 741
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	5 cut(s)	566, 718, 796, 820, 824
NlaIII	CATG	5 cut(s)	18, 116, 152, 226, 566
NlaIV	GGNNCC	3 cut(s)	385, 728, 791
NspI	RCATGY	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	41
PciI	ACATGT	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	179, 182, 316, 432, 489, 607
Ple19I	CGATCG	1 cut(s)	827
PleI	GAGTC	2 cut(s)	26, 653
PpsI	GAGTC	2 cut(s)	26, 653
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	726
PscI	ACATGT	1 cut(s)	14
Psp1406I	AACGTT	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	385, 728, 791
PspPI	GGNCC	3 cut(s)	182, 726, 790
PspPPI	RGGWCCY	1 cut(s)	726
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	827
RsaI	GTAC	4 cut(s)	9, 110, 209, 443
RsaNI	GTAC	4 cut(s)	8, 109, 208, 442
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	4 cut(s)	101, 237, 257, 357
SatI	GCNGC	6 cut(s)	178, 181, 315, 431, 488, 606
Sau3AI	GATC	5 cut(s)	566, 718, 796, 820, 824
Sau96I	GGNCC	3 cut(s)	182, 726, 790
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	2 cut(s)	26, 653
ScrFI	CCNGG	2 cut(s)	169, 381
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	41
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	726, 790
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	3 cut(s)	41, 304, 506
SmoI	CTYRAG	3 cut(s)	41, 304, 506
Sse9I	AATT	4 cut(s)	129, 172, 337, 371
SsiI	CCGC	6 cut(s)	178, 180, 287, 466, 487, 559
SspI	AATATT	2 cut(s)	752, 767
StyD4I	CCNGG	2 cut(s)	167, 379
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	4 cut(s)	251, 794, 818, 834
TaiI	ACGT	4 cut(s)	66, 110, 420, 634
TaqI	TCGA	4 cut(s)	42, 153, 823, 827
TasI	AATT	4 cut(s)	129, 172, 337, 371
TatI	WGTACW	2 cut(s)	207, 441
TauI	GCSGC	3 cut(s)	180, 183, 490
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	4 cut(s)	101, 237, 257, 357
Tru9I	TTAA	4 cut(s)	101, 237, 257, 357
TscAI	CASTG	1 cut(s)	823
TseI	GCWGC	3 cut(s)	314, 430, 605
TspDTI	ATGAA	5 cut(s)	74, 129, 141, 239, 530
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	823
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	726, 790
XapI	RAATTY	2 cut(s)	129, 371
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	41
XmiI	GTMKAC	2 cut(s)	144, 414
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.