AT5G37480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009994
Physical Location & Seq
Reverse (-)
14884191 .. 14885969
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37480.2

Sequence Viewer

Length: 471 bp
ATGGTGGACGATACATCACCTTTTCTGGAGGTTTTTTGTGAAGTTTCTGGTAAAGACTACCGATTCACAACAGGGACAAAGGCGGAGTTTGCTGTCTCTGTGATCAACAGGAAACTTGGTTCGTTGAAACCTCGAGTGATTTACATCGAAGCAGCAAAGGAAGGTGAAGAGCCTATTAGTTTTGGTGATAATGCTAGTCTTCTGAATTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGGGTTTTGCAAATGATTCAACACCAGAAATCGGAGAGCAAAGTCTGAAATACATTGGGAGGATATTTTTTGCATTTGTTTTGATGTTTATTCTTGGTGGCCTCTTCACAGTGGCTCTTGAGAACCTTCCTAGATTAATATTGCTCTTTAACAACTCTTTCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.36

Weight (kDa)

5.23

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 283
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 127, 229, 324
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
Alw26I GTCTC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 152
AseI ATTAAT 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 9, 176, 197
AvaI CYCGRG 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 191, 236
BbvI GCAGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 195, 435
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 191, 236
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 443
BsaBI GATNNNNATC 2 cut(s) 143, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse8I GATNNNNATC 2 cut(s) 143, 246
BseBI CCWGG 1 cut(s) 255
BseJI GATNNNNATC 2 cut(s) 143, 246
BseLI CCNNNNNNNGG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 405
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 2 cut(s) 102, 247
BspACI CCGC 2 cut(s) 83, 283
BspANI GGCC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 162
BssMI GATC 2 cut(s) 102, 247
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 235, 415
Bst6I CTCTTC 2 cut(s) 162, 413
BstKTI GATC 2 cut(s) 105, 250
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 102, 247
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 191, 236
BsuRI GGCC 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 420
CviJI RGCY 3 cut(s) 172, 405, 419
CviKI_1 RGCY 3 cut(s) 172, 405, 419
DpnI GATC 2 cut(s) 104, 249
DpnII GATC 2 cut(s) 102, 247
Eam1104I CTCTTC 2 cut(s) 162, 413
EarI CTCTTC 2 cut(s) 162, 413
EciI GGCGGA 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 253
FaiI YATR 1 cut(s) 210
FaqI GGGAC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 195, 435
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 405
HinfI GANTC 2 cut(s) 63, 320
HphI GGTGA 3 cut(s) 9, 176, 197
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 204, 338, 351
Hpy188III TCNNGA 2 cut(s) 26, 422
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 155, 440
HpyCH4III ACNGT 2 cut(s) 235, 415
HpyCH4V TGCA 2 cut(s) 314, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 102, 247
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 11, 33, 57, 94, 240, 267, 342
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 195, 435
MalI GATC 2 cut(s) 104, 249
MboI GATC 2 cut(s) 102, 247
MboII GAAGA 5 cut(s) 179, 191, 241, 282, 400
MluCI AATT 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 4 cut(s) 22, 141, 357, 416
MseI TTAA 2 cut(s) 440, 453
MspA1I CMGCKG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 102, 247
PaeR7I CTCGAG 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 63, 320
PkrI GCNGC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 440, 453
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 102, 247
ScrFI CCNGG 1 cut(s) 255
SetI ASST 6 cut(s) 22, 33, 133, 166, 256, 432
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 422
SmoI CTYRAG 2 cut(s) 132, 422
Sse9I AATT 1 cut(s) 205
SsiI CCGC 2 cut(s) 83, 283
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 195, 435
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 235, 415
TaqI TCGA 4 cut(s) 133, 147, 274, 302
TasI AATT 1 cut(s) 205
TfiI GAWTC 2 cut(s) 63, 320
Tru1I TTAA 2 cut(s) 440, 453
Tru9I TTAA 2 cut(s) 440, 453
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 420
VspI ATTAAT 1 cut(s) 440
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 2 cut(s) 195, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.