Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

786142 .. 789722

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1007700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACACGGCGGTTCGCGATGGGGACGGAGGCAGGATTCGCAGTCTCACTGATAAACAAGAAATTGGGTGCGGGGGACCCACTTGCTCTGCACATTGAAGCCGTCAAAGAAGGTGAGGAGCCCATCAGTTTCGGCCCCAGCTCCGCCCTCGTCGACTACGGCAGTGGCTGGCGGTTGCAGACCGTTACCCAGCTGGATTCTCCTGAGTTTGGAGGTGGAGAAGGGGTTGTAAGGCCAAGGGCAATGCCAGTTCCTGCTGTAACGCGTTCTACCAAGTTACATGATCCAAAGAGGGTGTTGAAACCAGCAATCAGTTTTACATACATTGGAAAAATAGTATTAGCCTTTGTTATGATTTTTGTGCTTGGTGCAATATTCACGTTGGCTCTCGAGAACCTTCCTAGAATGATTTCTTTCATCAATTCATCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

145

Amino Acids

15.52

Weight (kDa)

9.45

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	17, 265
AciI	CCGC	4 cut(s)	10, 71, 144, 172
AclWI	GGATC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	98, 301
AluBI	AGCT	2 cut(s)	141, 193
AluI	AGCT	2 cut(s)	141, 193
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	2 cut(s)	168, 254
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	133, 233
Asp700I	GAANNNNTTC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	76, 134
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	123
BccI	CCATC	2 cut(s)	13, 131
BceAI	ACGGC	3 cut(s)	23, 86, 175
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	76, 134
BmiI	GGNNCC	4 cut(s)	77, 78, 120, 136
BsaJI	CCNNGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	131
BseYI	CCCAGC	2 cut(s)	137, 189
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	17, 265
BshFI	GGCC	2 cut(s)	135, 235
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	2 cut(s)	37, 89
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	37, 89
BsnI	GGCC	2 cut(s)	135, 235
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	283
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	4 cut(s)	10, 71, 144, 172
BspANI	GGCC	2 cut(s)	135, 235
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	17, 265
BspLI	GGNNCC	4 cut(s)	77, 78, 120, 136
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	17, 265
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	17, 265
BsuRI	GGCC	2 cut(s)	135, 235
BtgZI	GCGATG	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	47, 169
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	170
CaiI	CAGNNNCTG	2 cut(s)	168, 254
Cfr13I	GGNCC	2 cut(s)	76, 134
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	9 cut(s)	101, 121, 135, 141, 168, 193, 235, 344, 386
CviKI_1	RGCY	9 cut(s)	101, 121, 135, 141, 168, 193, 235, 344, 386
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	1 cut(s)	284
FaiI	YATR	4 cut(s)	282, 322, 353, 431
FaqI	GGGAC	2 cut(s)	37, 89
FatI	CATG	1 cut(s)	280
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	402
GsaI	CCCAGC	2 cut(s)	141, 193
HaeIII	GGCC	2 cut(s)	135, 235
Hin1II	CATG	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	36, 197
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	16, 203, 389, 391
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	104, 215, 407
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	3 cut(s)	91, 178, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	284
KflI	GGGWCCC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	118, 146
LpnPI	CCDG	9 cut(s)	18, 151, 154, 179, 203, 216, 261, 267, 318
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	184, 259, 276
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	62, 421
MluI	ACGCGT	1 cut(s)	263
MnlI	CCTC	5 cut(s)	22, 109, 158, 206, 285
MroXI	GAANNNNTTC	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	17, 265
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	4 cut(s)	77, 78, 120, 136
NruI	TCGCGA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	36, 197
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	137, 189
PspN4I	GGNNCC	4 cut(s)	77, 78, 120, 136
PspPI	GGNCC	2 cut(s)	76, 134
PspPPI	RGGWCCY	1 cut(s)	76
PstNI	CAGNNNCTG	2 cut(s)	168, 254
PvuII	CAGCTG	1 cut(s)	193
RruI	TCGCGA	1 cut(s)	17
SalI	GTCGAC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	2 cut(s)	76, 134
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	115, 143, 195, 217, 383, 399
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	62, 421
SsiI	CCGC	4 cut(s)	10, 71, 144, 172
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	2 cut(s)	153, 390
TasI	AATT	2 cut(s)	62, 421
TfiI	GAWTC	2 cut(s)	36, 197
TscAI	CASTG	2 cut(s)	54, 169
TspDTI	ATGAA	2 cut(s)	406, 414
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	54, 169
VpaK11BI	GGWCC	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.