Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

95208 .. 97267

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggacgaagaagaagctccaactcatcggcctcctcctccgtttgtggaggtgaaatgcgagagttcaggcatgagaaggcgcttcgcaatgggcactgaagcaggtttcgcagtgtcagtcataaacagcaaattgggtacagtgggggacaatcaccctcaccctcaccctcttgctctgcacattgaagccgttaaggaagctgaggagcctatcactttcggactcaactcacttctcgtcgactacggccccggttggacattacacaccgttaccgaactcccattttctggtggagaaggtgttgttaggccaaagccaatgcaagttcctcatgtaatgatgaagattcccaagatcaggctagagcagatcgaggtagtagggaatgatcaaggagcttgggaatatgcctgcatccttgcacagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

146

Amino Acids

16.04

Weight (kDa)

5.43

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	296, 366
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	4 cut(s)	17, 206, 407, 436
AluI	AGCT	4 cut(s)	17, 206, 407, 436
AoxI	GGCC	3 cut(s)	29, 253, 317
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	64, 149, 155, 161
BaeGI	GKGCMC	1 cut(s)	98
BbvCI	CCTCAGC	1 cut(s)	207
BceAI	ACGGC	2 cut(s)	179, 268
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	213, 256
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 366
Bse3DI	GCAATG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	296, 366
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	3 cut(s)	24, 27, 224
BseSI	GKGCMC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	31, 255, 319
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	296, 366
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	31, 255, 319
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	363, 378, 397
BspANI	GGCC	3 cut(s)	31, 255, 319
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	213, 256
BspMI	ACCTGC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	363, 378, 397
Bst4CI	ACNGT	2 cut(s)	145, 277
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	366, 381, 400
BstMBI	GATC	3 cut(s)	363, 378, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	31, 255, 319
BtsCI	GGATG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	96, 120, 150
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	73, 341
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	365, 380, 399
DpnII	GATC	3 cut(s)	363, 378, 397
Eco57I	CTGAAG	1 cut(s)	120
FaeI	CATG	2 cut(s)	76, 344
FaiI	YATR	4 cut(s)	74, 125, 342, 417
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	72, 340
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	410
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	31, 255, 319
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	76, 344
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	228, 355
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	4 cut(s)	64, 149, 155, 161
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	72, 299
HpyCH4III	ACNGT	2 cut(s)	145, 277
HpyCH4V	TGCA	4 cut(s)	184, 331, 423, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	76, 344
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	363, 378, 397
LmnI	GCTCC	3 cut(s)	22, 211, 404
LpnPI	CCDG	6 cut(s)	54, 90, 271, 282, 352, 433
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	365, 380, 399
MboI	GATC	3 cut(s)	363, 378, 397
MboII	GAAGA	3 cut(s)	20, 23, 364
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	44, 242
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	363, 378, 397
NlaIII	CATG	2 cut(s)	76, 344
NlaIV	GGNNCC	2 cut(s)	213, 256
PfeI	GAWTC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	296
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	213, 256
PspPI	GGNCC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	363, 378, 397
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	8 cut(s)	19, 54, 109, 208, 310, 387, 409, 438
SfaNI	GCATC	1 cut(s)	432
Sse9I	AATT	1 cut(s)	134
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	145, 277
TaqI	TCGA	2 cut(s)	246, 381
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	103, 120, 150
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	103, 120, 150
Van91I	CCANNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.