Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003733.1

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Forward (+)

156714 .. 161395

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003733.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggacgaagaagaagaagctccaactcatcggcctcctcctccgtttgtggaggtgaaatgcgagagttcaggcatgagaaggcgcttcgcaatgggcacagaagcaggtttcgcagtgtcagtcataaacagcaaattgggtacagtgggggaccctcaccctcaccctctttctctgcacattgaagccgttaaggaaggtgaggagcctatcactttcggacctaactcacttctcgtcgactacggccccggttggacattacacactgttacccaactcccattttctggtggagaaggtgttgttaggccaaagccaatgcaagttcctcatgtaatgggctctgacaacttgcatgctgcaaaaggggggcagaagcacagcatctctcagctcagcgatgaagtgagttgcaaaagtcttgatccaatcaggcgagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

5.73

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	2 cut(s)	20, 400
AluI	AGCT	2 cut(s)	20, 400
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	32, 250, 314
ApeKI	GCWGC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	3 cut(s)	154, 224, 251
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	4 cut(s)	67, 152, 158, 215
AvaII	GGWCC	2 cut(s)	154, 224
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	352
BceAI	ACGGC	2 cut(s)	176, 265
BcnI	CCSGG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	366
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	154, 224
BmgT120I	GGNCC	3 cut(s)	154, 224, 251
BmiI	GGNNCC	4 cut(s)	155, 156, 210, 253
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	410, 415
BseRI	GAGGAG	3 cut(s)	27, 30, 221
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	34, 252, 316
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	34, 252, 316
Bsp1286I	GDGCHC	2 cut(s)	101, 350
Bsp143I	GATC	1 cut(s)	430
Bsp1720I	GCTNAGC	1 cut(s)	401
BspANI	GGCC	3 cut(s)	34, 252, 316
BspCNI	CTCAG	2 cut(s)	409, 414
BspLI	GGNNCC	4 cut(s)	155, 156, 210, 253
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	148, 274
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	396, 401
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	34, 252, 316
BtgZI	GCGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 153, 270
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	3 cut(s)	154, 224, 251
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	76, 338, 362
CviJI	RGCY	9 cut(s)	20, 34, 191, 211, 252, 316, 322, 348, 400
CviKI_1	RGCY	9 cut(s)	20, 34, 191, 211, 252, 316, 322, 348, 400
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	396, 401
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	154, 224
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	350
FaeI	CATG	3 cut(s)	79, 341, 365
FaiI	YATR	4 cut(s)	77, 128, 339, 363
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	75, 337, 361
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	34, 252, 316
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	79, 341, 365
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	4 cut(s)	67, 152, 158, 215
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	224, 352
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	75, 194, 296
HpyCH4III	ACNGT	2 cut(s)	148, 274
HpyCH4V	TGCA	5 cut(s)	181, 328, 361, 368, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	396, 401
Hsp92II	CATG	3 cut(s)	79, 341, 365
HspAI	GCGC	1 cut(s)	85
KflI	GGGWCCC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	25, 208
LpnPI	CCDG	5 cut(s)	57, 93, 268, 279, 424
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	20, 23, 26
MhlI	GDGCHC	2 cut(s)	101, 350
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	47, 239
MnlI	CCTC	9 cut(s)	45, 46, 48, 51, 168, 174, 180, 199, 345
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	79, 341, 365
NlaIV	GGNNCC	4 cut(s)	155, 156, 210, 253
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	4 cut(s)	155, 156, 210, 253
PspPI	GGNCC	3 cut(s)	154, 224, 251
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	3 cut(s)	154, 224, 251
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	101, 350
SetI	ASST	7 cut(s)	22, 57, 112, 205, 229, 307, 402
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	2 cut(s)	154, 224
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	148, 274
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	123, 153, 277
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	123, 153, 277
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	154, 224
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.