Rh3BG363000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009994
Physical Location & Seq
Forward (+)
44532396 .. 44544143
11748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG363000.1

Sequence Viewer

Length: 384 bp
ATGGATGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACGGTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTTGGACCCAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAACGCAAGTTCCTCATGTAATGGTATGTGCTTATTATATCTTGTTTATGTTTTCTGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT

Protein Analysis

127

Amino Acids

13.85

Weight (kDa)

5.6

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 290
AccI GTMKAC 1 cut(s) 240
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 3 cut(s) 29, 247, 311
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 151, 221, 248
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 64, 149, 155, 212
AvaII GGWCC 2 cut(s) 151, 221
BaeGI GKGCMC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 173, 262
BcnI CCSGG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 2 cut(s) 151, 221
BmgT120I GGNCC 3 cut(s) 151, 221, 248
BmiI GGNNCC 5 cut(s) 152, 153, 207, 223, 250
BmrFI CCNGG 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 96
BseRI GAGGAG 3 cut(s) 24, 27, 218
BseSI GKGCMC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 3 cut(s) 31, 249, 313
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 3 cut(s) 31, 249, 313
Bsp1286I GDGCHC 1 cut(s) 98
BspANI GGCC 3 cut(s) 31, 249, 313
BspLI GGNNCC 5 cut(s) 152, 153, 207, 223, 250
BspMI ACCTGC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 145, 271
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 31, 249, 313
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 267
BveI ACCTGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 3 cut(s) 151, 221, 248
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 73, 335
CviJI RGCY 7 cut(s) 17, 31, 188, 208, 249, 313, 319
CviKI_1 RGCY 7 cut(s) 17, 31, 188, 208, 249, 313, 319
CviQI GTAC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 151, 221
EcoO109I RGGNCCY 1 cut(s) 151
FaeI CATG 2 cut(s) 76, 338
FaiI YATR 6 cut(s) 74, 125, 336, 346, 357, 368
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 72, 334
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 3 cut(s) 31, 249, 313
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 76, 338
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaII CCGG 1 cut(s) 252
HphI GGTGA 4 cut(s) 64, 149, 155, 212
Hpy166II GTNNAC 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 72, 191, 293
HpyCH4III ACNGT 2 cut(s) 145, 271
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 76, 338
HspAI GCGC 1 cut(s) 82
KflI GGGWCCC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 22, 205
LpnPI CCDG 4 cut(s) 54, 90, 265, 276
MaeIII GTNAC 1 cut(s) 271
MboII GAAGA 2 cut(s) 20, 23
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 44, 236
MnlI CCTC 9 cut(s) 42, 43, 45, 48, 165, 171, 177, 196, 342
MseI TTAA 2 cut(s) 192, 382
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 252
NlaIII CATG 2 cut(s) 76, 338
NlaIV GGNNCC 5 cut(s) 152, 153, 207, 223, 250
PflMI CCANNNNNTGG 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 5 cut(s) 152, 153, 207, 223, 250
PspPI GGNCC 3 cut(s) 151, 221, 248
PspPPI RGGWCCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 192, 382
Sau96I GGNCC 3 cut(s) 151, 221, 248
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 98
SetI ASST 5 cut(s) 19, 54, 109, 202, 304
SinI GGWCC 2 cut(s) 151, 221
Sse9I AATT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 145, 271
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 134
Tru1I TTAA 2 cut(s) 192, 382
Tru9I TTAA 2 cut(s) 192, 382
TscAI CASTG 2 cut(s) 120, 274
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 120, 274
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 151, 221
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.