Rh3CG359900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009994
Physical Location & Seq
Forward (+)
44664316 .. 44669199
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG359900.1

Sequence Viewer

Length: 399 bp
ATGATGGACGAAGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCTAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTAATTCTACTTCTGTTTGGTTTTGTCAAGACTTGTTCAATGTTGGATTTTGTCATTATTTTTTTACTTTGTTCAACTATAGGTGGAGAAGGTGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT

Protein Analysis

132

Amino Acids

14.92

Weight (kDa)

5.61

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 246
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 191, 337, 373
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 2 cut(s) 35, 253
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 3 cut(s) 157, 227, 254
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 4 cut(s) 70, 155, 161, 218
AvaII GGWCC 2 cut(s) 157, 227
BaeGI GKGCMC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
BceAI ACGGC 2 cut(s) 179, 268
BcnI CCSGG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 157, 227
BmgT120I GGNCC 3 cut(s) 157, 227, 254
BmiI GGNNCC 4 cut(s) 158, 159, 213, 256
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 30, 33, 224
BseSI GKGCMC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 2 cut(s) 37, 255
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 37, 255
Bsp1286I GDGCHC 1 cut(s) 104
BspANI GGCC 2 cut(s) 37, 255
BspLI GGNNCC 4 cut(s) 158, 159, 213, 256
BspMI ACCTGC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 151, 277
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 37, 255
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 126, 156, 273
BveI ACCTGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 3 cut(s) 157, 227, 254
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 79
CviJI RGCY 5 cut(s) 23, 37, 194, 214, 255
CviKI_1 RGCY 5 cut(s) 23, 37, 194, 214, 255
CviQI GTAC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 157, 227
EcoO109I RGGNCCY 1 cut(s) 157
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 80, 131, 378
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 246
GlaI GCGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 2 cut(s) 37, 255
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 258
HphI GGTGA 4 cut(s) 70, 155, 161, 218
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 78, 197, 381
HpyCH4III ACNGT 2 cut(s) 151, 277
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 88
KflI GGGWCCC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 28, 211
LpnPI CCDG 4 cut(s) 60, 96, 271, 282
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 3 cut(s) 23, 26, 29
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 140, 301
MmeI TCCRAC 3 cut(s) 50, 242, 322
MnlI CCTC 8 cut(s) 48, 49, 51, 54, 171, 177, 183, 202
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 258
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 158, 159, 213, 256
PflMI CCANNNNNTGG 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 158, 159, 213, 256
PspPI GGNCC 3 cut(s) 157, 227, 254
PspPPI RGGWCCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 198
Sau96I GGNCC 3 cut(s) 157, 227, 254
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 104
SetI ASST 7 cut(s) 25, 60, 115, 208, 232, 383, 392
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 2 cut(s) 157, 227
Sse9I AATT 2 cut(s) 140, 301
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 151, 277
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 140, 301
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 3 cut(s) 126, 156, 280
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 126, 156, 280
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 157, 227
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.