Rorug03G0280000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009994
Physical Location & Seq
Reverse (-)
27781171 .. 27782857
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0280000.1

Sequence Viewer

Length: 300 bp
ATGGCAGGGTTACTGGTGGCCATCCATCAAGGGTGGAAAGAGGTTGAAATAGAAAGTGATTCCTCCATTTTGGTGAATGCCTTAAACCGGAGTGGTGAAGACAACTCAGAGGTGGTGACTGCTTTACAGGAAAAGGAGGCAATGGAATACACTATTGTGGTAGCTGAAGCGGCGGATTTCCCGGCTACATTACAGTATCTTGCTCCTTATACAGGAGCAGCTCTGGTCGAATATTTCATATACCGTGAGCAACACACTTTAATCACTTATGACTGTCTCTCCAAACAAGCACAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

4.3

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 20 - 98 3.5e-13 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 170, 173
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 87, 212
AgsI TTSAA 1 cut(s) 47
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 2 cut(s) 164, 221
AluI AGCT 2 cut(s) 164, 221
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 85, 107, 127
BalI TGGCCA 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 29, 33
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 281
BisI GCNGC 2 cut(s) 171, 219
BlsI GCNGC 2 cut(s) 172, 220
Bme1390I CCNGG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 212
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 87, 212
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 2 cut(s) 88, 182
BslI CCNNNNNNNGG 2 cut(s) 87, 212
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 1 cut(s) 20
BspACI CCGC 2 cut(s) 170, 173
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 18
Bst4CI ACNGT 4 cut(s) 195, 245, 275, 294
BstDEI CTNAG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 281
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 21
CviJI RGCY 4 cut(s) 20, 164, 185, 221
CviKI_1 RGCY 4 cut(s) 20, 164, 185, 221
DdeI CTNAG 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 210
FaiI YATR 4 cut(s) 210, 239, 241, 270
Fnu4HI GCNGC 2 cut(s) 171, 219
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 171, 219
GluI GCNGC 2 cut(s) 171, 219
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 88, 182
HinfI GANTC 1 cut(s) 59
HpaII CCGG 2 cut(s) 88, 182
HphI GGTGA 3 cut(s) 85, 107, 127
Hpy188I TCNGA 1 cut(s) 109
HpyCH4III ACNGT 4 cut(s) 195, 245, 275, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 106
LmnI GCTCC 2 cut(s) 208, 215
LpnPI CCDG 5 cut(s) 101, 113, 195, 198, 209
Lsp1109I GCAGC 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 9, 115
MboII GAAGA 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 20
MnlI CCTC 4 cut(s) 34, 73, 103, 130
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 3 cut(s) 83, 260, 298
MslI CAYNNNNRTG 2 cut(s) 71, 155
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 2 cut(s) 88, 182
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 155
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 172, 220
RseI CAYNNNNRTG 2 cut(s) 71, 155
SaqAI TTAA 3 cut(s) 83, 260, 298
SatI GCNGC 2 cut(s) 171, 219
ScrFI CCNGG 1 cut(s) 182
SetI ASST 4 cut(s) 45, 114, 166, 223
SmiMI CAYNNNNRTG 2 cut(s) 71, 155
SsiI CCGC 2 cut(s) 170, 173
SspI AATATT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 4 cut(s) 195, 245, 275, 294
TaqI TCGA 1 cut(s) 228
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 3 cut(s) 83, 260, 298
Tru9I TTAA 3 cut(s) 83, 260, 298
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.