Rh3DG363100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009994
Physical Location & Seq
Forward (+)
45232542 .. 45237423
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG363100.1

Sequence Viewer

Length: 390 bp
ATGATGGACGAAGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGGATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCTAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAATGGTATGTGCTTATTGTATCTTGTTTATGTTTTCTGCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

5.62

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 246
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 3 cut(s) 35, 253, 317
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 3 cut(s) 157, 227, 254
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 4 cut(s) 70, 155, 161, 218
AvaII GGWCC 2 cut(s) 157, 227
BaeGI GKGCMC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 179, 268
BcnI CCSGG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 157, 227
BmgT120I GGNCC 3 cut(s) 157, 227, 254
BmiI GGNNCC 4 cut(s) 158, 159, 213, 256
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 30, 33, 224
BseSI GKGCMC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 3 cut(s) 37, 255, 319
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 3 cut(s) 37, 255, 319
Bsp1286I GDGCHC 1 cut(s) 104
BspANI GGCC 3 cut(s) 37, 255, 319
BspLI GGNNCC 4 cut(s) 158, 159, 213, 256
BspMI ACCTGC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 151, 277
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 104
BsuRI GGCC 3 cut(s) 37, 255, 319
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 126, 156, 273
BveI ACCTGC 1 cut(s) 101
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 3 cut(s) 157, 227, 254
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 341
CviJI RGCY 7 cut(s) 23, 37, 194, 214, 255, 319, 325
CviKI_1 RGCY 7 cut(s) 23, 37, 194, 214, 255, 319, 325
CviQI GTAC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 157, 227
EcoO109I RGGNCCY 1 cut(s) 157
FaeI CATG 1 cut(s) 344
FaiI YATR 4 cut(s) 131, 342, 352, 374
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 246
FokI GGATG 1 cut(s) 91
GlaI GCGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 3 cut(s) 37, 255, 319
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 258
HphI GGTGA 4 cut(s) 70, 155, 161, 218
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 78, 197, 299
HpyCH4III ACNGT 2 cut(s) 151, 277
HpyCH4V TGCA 2 cut(s) 184, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 88
KflI GGGWCCC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 28, 211
LpnPI CCDG 4 cut(s) 60, 96, 271, 282
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 3 cut(s) 23, 26, 29
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 50, 242
MnlI CCTC 9 cut(s) 48, 49, 51, 54, 171, 177, 183, 202, 348
MseI TTAA 2 cut(s) 198, 388
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 258
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 4 cut(s) 158, 159, 213, 256
PflMI CCANNNNNTGG 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 158, 159, 213, 256
PspPI GGNCC 3 cut(s) 157, 227, 254
PspPPI RGGWCCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 198, 388
Sau96I GGNCC 3 cut(s) 157, 227, 254
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 25, 60, 115, 208, 232, 310
SinI GGWCC 2 cut(s) 157, 227
Sse9I AATT 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 151, 277
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 140
Tru1I TTAA 2 cut(s) 198, 388
Tru9I TTAA 2 cut(s) 198, 388
TscAI CASTG 3 cut(s) 126, 156, 280
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 126, 156, 280
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 157, 227
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.