Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Forward (+)

46767386 .. 46772348

Gene Structure 4963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGACGAAGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAGTGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTAAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCCAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACGTTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAATGGGCTCTGACAACTTGCATGCTGCAAAGGGGGTACCAAGACAAGCAATCGATTTTATGTACATTGGAAAAATAGTGTTAGCTTTTATTTTTATTTTTGTACTTGGCGCAATTTTGACTTTGGTTCTTGAGAACATTCCTAGACTGATGAAGTTGCTCGAACAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

6.15

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	243
AfaI	GTAC	4 cut(s)	145, 378, 404, 444
AfiI	CCNNNNNNNGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	20, 425
AluI	AGCT	2 cut(s)	20, 425
AoxI	GGCC	3 cut(s)	32, 250, 314
ApeKI	GCWGC	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	376
AspLEI	GCGC	2 cut(s)	87, 452
AspS9I	GGNCC	3 cut(s)	154, 224, 251
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	4 cut(s)	67, 152, 158, 215
AvaII	GGWCC	2 cut(s)	154, 224
BaeGI	GKGCMC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	352
BceAI	ACGGC	2 cut(s)	176, 265
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	154, 224
BmgT120I	GGNCC	3 cut(s)	154, 224, 251
BmiI	GGNNCC	6 cut(s)	155, 156, 210, 226, 253, 378
BmrFI	CCNGG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	99
BseRI	GAGGAG	3 cut(s)	27, 30, 221
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	34, 252, 316
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	34, 252, 316
Bsp1286I	GDGCHC	2 cut(s)	101, 350
Bsp1407I	TGTACA	1 cut(s)	402
BspANI	GGCC	3 cut(s)	34, 252, 316
BspDI	ATCGAT	1 cut(s)	393
BspLI	GGNNCC	6 cut(s)	155, 156, 210, 226, 253, 378
BspMI	ACCTGC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	148, 274
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	34, 252, 316
BsuTUI	ATCGAT	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 153, 270
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	2 cut(s)	87, 452
Cfr13I	GGNCC	3 cut(s)	154, 224, 251
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	4 cut(s)	144, 377, 403, 443
CviAII	CATG	3 cut(s)	76, 338, 362
CviJI	RGCY	9 cut(s)	20, 34, 191, 211, 252, 316, 322, 348, 425
CviKI_1	RGCY	9 cut(s)	20, 34, 191, 211, 252, 316, 322, 348, 425
CviQI	GTAC	4 cut(s)	144, 377, 403, 443
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	154, 224
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	350
FaeI	CATG	3 cut(s)	79, 341, 365
FaiI	YATR	6 cut(s)	77, 128, 339, 363, 401, 510
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	75, 337, 361
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	86, 451
GluI	GCNGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	34, 252, 316
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	87, 452
Hin1II	CATG	3 cut(s)	79, 341, 365
Hin6I	GCGC	2 cut(s)	85, 450
HinP1I	GCGC	2 cut(s)	85, 450
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	4 cut(s)	67, 152, 158, 215
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	224, 352
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	75, 194, 296
HpyCH4III	ACNGT	2 cut(s)	148, 274
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	181, 328, 361, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	79, 341, 365
HspAI	GCGC	2 cut(s)	85, 450
KflI	GGGWCCC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	25, 208
LpnPI	CCDG	4 cut(s)	57, 93, 268, 279
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	264, 274
MboII	GAAGA	3 cut(s)	20, 23, 26
MhlI	GDGCHC	2 cut(s)	101, 350
MluCI	AATT	2 cut(s)	137, 453
MmeI	TCCRAC	2 cut(s)	47, 239
MnlI	CCTC	9 cut(s)	45, 46, 48, 51, 168, 174, 180, 199, 345
MseI	TTAA	2 cut(s)	186, 195
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	255
NlaIII	CATG	3 cut(s)	79, 341, 365
NlaIV	GGNNCC	6 cut(s)	155, 156, 210, 226, 253, 378
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	6 cut(s)	155, 156, 210, 226, 253, 378
PspPI	GGNCC	3 cut(s)	154, 224, 251
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	4 cut(s)	145, 378, 404, 444
RsaNI	GTAC	4 cut(s)	144, 377, 403, 443
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	186, 195
SatI	GCNGC	1 cut(s)	366
Sau96I	GGNCC	3 cut(s)	154, 224, 251
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	101, 350
SetI	ASST	7 cut(s)	22, 57, 112, 205, 266, 307, 427
SinI	GGWCC	2 cut(s)	154, 224
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	137, 453
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	148, 274
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	243, 393, 501
TasI	AATT	2 cut(s)	137, 453
TatI	WGTACW	2 cut(s)	402, 442
Tru1I	TTAA	2 cut(s)	186, 195
Tru9I	TTAA	2 cut(s)	186, 195
TscAI	CASTG	3 cut(s)	123, 153, 277
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	123, 153, 277
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	154, 224
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.