Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

1075108 .. 1077790

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1010600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACGAAGCTCAACCTCCTACTCCTACTCCGTTTCTGGAGGTGAAATGTCAGAGTTCAGGGATGACACGGCGGTTCGCGATGGGGACGGAGGCAGGATTCGCAGTCTCACTCATAAACAAGAAATTGGGTGCGGGGGACCCACTTGCTCTGCACATTGAAGCCGTCAAAGAAGGTGAGGAGCCCATCAGTTTCGGCCCCAGCTCCGCCCTGGTCGATTACGGCAGTGGCTGGCGGTTACAGACCGTTACCCAGCTGGATTCACCTGGGTTTGGAGGTGGAGAAGGAGTTGTAAGGCCAATGCCAATGCCAGTTCCCGATGTAATGCGTTCTGCCAAGTTACATGTTCCAAAGAGGGTGTTGAAACCAGCAATCAGTTTTACGTACATTGGAAAAATAGTATTAGCTTTCGTTTTTATTTTTGTACTTGGTGCAATTTTCACGTTGGCTCTCGAGAACCTTCCTGGAATGATTTCTTTTATCAGTTCATCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

166

Amino Acids

17.61

Weight (kDa)

6.73

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	73, 134, 207, 235
AfaI	GTAC	2 cut(s)	386, 426
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	161, 364
AjnI	CCWGG	3 cut(s)	210, 265, 463
AluBI	AGCT	4 cut(s)	11, 204, 256, 407
AluI	AGCT	4 cut(s)	11, 204, 256, 407
Alw26I	GTCTC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	196, 296
Asp700I	GAANNNNTTC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	139, 197
AsuHPI	GGTGA	3 cut(s)	55, 188, 255
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	186
BccI	CCATC	2 cut(s)	76, 194
BceAI	ACGGC	3 cut(s)	86, 149, 238
BciT130I	CCWGG	3 cut(s)	212, 267, 465
BcoDI	GTCTC	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	212, 267, 465
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	139, 197
BmiI	GGNNCC	4 cut(s)	140, 141, 183, 199
BmrFI	CCNGG	3 cut(s)	212, 267, 465
BpmI	CTGGAG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	210, 266
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	212, 267, 465
BseDI	CCNNGG	2 cut(s)	210, 266
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	194
BseYI	CCCAGC	2 cut(s)	200, 252
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	198, 298
BsiHKCI	CYCGRG	1 cut(s)	452
BslFI	GGGAC	2 cut(s)	100, 152
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	100, 152
BsnI	GGCC	2 cut(s)	198, 298
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	4 cut(s)	73, 134, 207, 235
BspANI	GGCC	2 cut(s)	198, 298
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	140, 141, 183, 199
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	210, 266
Bst2UI	CCWGG	3 cut(s)	212, 267, 465
Bst4CI	ACNGT	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	3 cut(s)	212, 267, 465
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	210, 265, 463
BstSNI	TACGTA	1 cut(s)	384
BstUI	CGCG	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	198, 298
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
BtuMI	TCGCGA	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	139, 197
Csp6I	GTAC	2 cut(s)	385, 425
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	385, 425
EciI	GGCGGA	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	210, 265, 463
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	347
FaiI	YATR	3 cut(s)	116, 345, 494
FaqI	GGGAC	2 cut(s)	100, 152
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	186
GsaI	CCCAGC	2 cut(s)	204, 256
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	198, 298
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	2 cut(s)	99, 260
HphI	GGTGA	3 cut(s)	55, 188, 255
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	5 cut(s)	38, 79, 317, 452, 454
HpyAV	CCTTC	3 cut(s)	167, 278, 470
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	383, 443
HpyCH4V	TGCA	2 cut(s)	154, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	383, 443
Hsp92II	CATG	1 cut(s)	347
KflI	GGGWCCC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	181, 209
MaeII	ACGT	2 cut(s)	383, 443
MaeIII	GTNAC	3 cut(s)	237, 247, 339
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	125, 435
MnlI	CCTC	6 cut(s)	27, 34, 85, 172, 269, 348
MroXI	GAANNNNTTC	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	256
MspR9I	CCNGG	3 cut(s)	212, 267, 465
MvaI	CCWGG	3 cut(s)	212, 267, 465
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	4 cut(s)	140, 141, 183, 199
NruI	TCGCGA	1 cut(s)	80
NspI	RCATGY	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	452
PciI	ACATGT	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	99, 260
PfoI	TCCNGGA	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	210, 265, 463
PspFI	CCCAGC	2 cut(s)	200, 252
PspGI	CCWGG	3 cut(s)	210, 265, 463
PspN4I	GGNNCC	4 cut(s)	140, 141, 183, 199
PspPI	GGNCC	2 cut(s)	139, 197
PspPPI	RGGWCCY	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	256
RruI	TCGCGA	1 cut(s)	80
RsaI	GTAC	2 cut(s)	386, 426
RsaNI	GTAC	2 cut(s)	385, 425
Sau96I	GGNCC	2 cut(s)	139, 197
ScrFI	CCNGG	3 cut(s)	212, 267, 465
SduI	GDGCHC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SnaBI	TACGTA	1 cut(s)	384
Sse9I	AATT	2 cut(s)	125, 435
SsiI	CCGC	4 cut(s)	73, 134, 207, 235
StyD4I	CCNGG	3 cut(s)	210, 265, 463
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	386, 446
TaqI	TCGA	2 cut(s)	216, 453
TasI	AATT	2 cut(s)	125, 435
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	99, 260
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	21, 104
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	139
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.