Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

20826232 .. 20829901

Gene Structure 3670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGAAGCAGACTCCCCAACCCCTCGTCCTCCGTTTGTGGAGGTGAAATGCGAAAGTTCAGGCATGAGAAGGCGCTTTGCAATTGGCACAGAAGCTGGTTTCGCAGCATCAGTGATCAACAACAAACTGGGTTCAGTTGATTCTGTGTACATTGAAGCCGTTAAGGAAGGTGAAGAGCCCATCACTTTTGGACCCAACTCACTTCTCGTCGACTACGGCCACGGTTGGACATTACACACTGTTACAGGGGAAGGTGTTGTTAGGCCTAAGCCGATCCAAGTTCATCATGTAATGGGTTCTGACAACTTACATGCTGCAAAGAGGGTACCTGATCAAGCAATCAATTTTATATACATTGGAAAAATAGTGATAGCTTTTATTTTGATCTTCGTACTTGGCGCAATTTTGGCTTTGGTTCTTGAGAACGTTCCTAGACTGATAGAGTTACTCGAACAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

156

Amino Acids

16.96

Weight (kDa)

5.49

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	213
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	3 cut(s)	152, 330, 396
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	2 cut(s)	98, 377
AluI	AGCT	2 cut(s)	98, 377
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	220, 266
ApeKI	GCWGC	2 cut(s)	107, 317
Asp718I	GGTACC	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	78, 404
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	58, 185
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	119, 304
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	146, 235
BclI	TGATCA	2 cut(s)	117, 334
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	2 cut(s)	108, 318
BlsI	GCNGC	2 cut(s)	109, 319
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	196, 330
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	119, 304
BshFI	GGCC	2 cut(s)	222, 268
BshNI	GGYRCC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	222, 268
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	117, 276, 334, 387
BspANI	GGCC	2 cut(s)	222, 268
BspLI	GGNNCC	2 cut(s)	196, 330
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	117, 276, 334, 387
Bst4CI	ACNGT	2 cut(s)	227, 244
Bst6I	CTCTTC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 404
BstKTI	GATC	4 cut(s)	120, 279, 337, 390
BstMBI	GATC	4 cut(s)	117, 276, 334, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 410
BstNSI	RCATGY	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	119, 304
BsuRI	GGCC	2 cut(s)	222, 268
BtgI	CCRYGG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	120, 240
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	2 cut(s)	78, 404
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	151, 329, 395
CviAII	CATG	3 cut(s)	67, 290, 314
CviJI	RGCY	8 cut(s)	98, 161, 181, 222, 268, 274, 377, 413
CviKI_1	RGCY	8 cut(s)	98, 161, 181, 222, 268, 274, 377, 413
CviQI	GTAC	3 cut(s)	151, 329, 395
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	119, 278, 336, 389
DpnII	GATC	4 cut(s)	117, 276, 334, 387
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	70, 293, 317
FaiI	YATR	6 cut(s)	68, 291, 315, 353, 355, 462
FatI	CATG	3 cut(s)	66, 289, 313
FbaI	TGATCA	2 cut(s)	117, 334
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	108, 318
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	108, 318
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	77, 403
GluI	GCNGC	2 cut(s)	108, 318
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	222, 268
HhaI	GCGC	2 cut(s)	78, 404
Hin1II	CATG	3 cut(s)	70, 293, 317
Hin6I	GCGC	2 cut(s)	76, 402
HinP1I	GCGC	2 cut(s)	76, 402
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	14, 143
HphI	GGTGA	2 cut(s)	58, 185
Hpy166II	GTNNAC	2 cut(s)	151, 214
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	2 cut(s)	151, 214
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	66, 164, 248
HpyCH4III	ACNGT	2 cut(s)	227, 244
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	83, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 410
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	70, 293, 317
HspAI	GCGC	2 cut(s)	76, 402
KpnI	GGTACC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	117, 334
Kzo9I	GATC	4 cut(s)	117, 276, 334, 387
LguI	GCTCTTC	1 cut(s)	171
LpnPI	CCDG	5 cut(s)	48, 84, 116, 234, 345
Lsp1109I	GCAGC	2 cut(s)	119, 304
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	244, 447
MalI	GATC	4 cut(s)	119, 278, 336, 389
MboI	GATC	4 cut(s)	117, 276, 334, 387
MboII	GAAGA	2 cut(s)	188, 382
MfeI	CAATTG	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	84, 346, 405
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	36, 37, 42, 318
MseI	TTAA	1 cut(s)	165
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	104, 410
NdeII	GATC	4 cut(s)	117, 276, 334, 387
NlaIII	CATG	3 cut(s)	70, 293, 317
NlaIV	GGNNCC	2 cut(s)	196, 330
NspI	RCATGY	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	109, 319
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	196, 330
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	152, 330, 396
RsaNI	GTAC	3 cut(s)	151, 329, 395
SalI	GTCGAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	108, 318
Sau3AI	GATC	4 cut(s)	117, 276, 334, 387
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	48, 100, 175, 259, 334, 379, 432
SfaNI	GCATC	1 cut(s)	119
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	84, 346, 405
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	227, 244
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	213, 453
TasI	AATT	3 cut(s)	84, 346, 405
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	120, 247
TseI	GCWGC	2 cut(s)	107, 317
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	120, 247
VpaK11BI	GGWCC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.