Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Forward (+)

43104303 .. 43109059

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGGACGAAGAAGAAGAAGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTGGGGGACCCTCACCCTCACCCTCTTTCTCTGCACATTGAAGCCATTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCCAACTCACTTCTCGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAAGGGGCTCTGACAACTTGCATGCTGCAAAGGAGGTACCAAGACCAGCAATCGATTTTATGTACATTGGAAAAATAGTGATAGCTTTTATTTTTATTTTTCTACTTGGCGCAATTTTGACTTTGGTTCTTGAGAACATTCCTAGACTGATGAAGTTGCTCGAACAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

5.78

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	246
AfaI	GTAC	3 cut(s)	148, 381, 407
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	2 cut(s)	23, 428
AluI	AGCT	2 cut(s)	23, 428
AoxI	GGCC	3 cut(s)	35, 253, 317
ApeKI	GCWGC	1 cut(s)	368
Asp718I	GGTACC	1 cut(s)	379
AspLEI	GCGC	2 cut(s)	90, 455
AspS9I	GGNCC	3 cut(s)	157, 227, 254
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	70, 155, 161, 218
AvaII	GGWCC	2 cut(s)	157, 227
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	157, 227
BmgT120I	GGNCC	3 cut(s)	157, 227, 254
BmiI	GGNNCC	6 cut(s)	158, 159, 213, 229, 256, 381
BmrFI	CCNGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	102
BseRI	GAGGAG	3 cut(s)	30, 33, 224
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	37, 255, 319
BshNI	GGYRCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	37, 255, 319
Bsp1286I	GDGCHC	2 cut(s)	104, 353
Bsp1407I	TGTACA	1 cut(s)	405
BspANI	GGCC	3 cut(s)	37, 255, 319
BspDI	ATCGAT	1 cut(s)	396
BspLI	GGNNCC	6 cut(s)	158, 159, 213, 229, 256, 381
BspMI	ACCTGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	151, 277
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	37, 255, 319
BsuTUI	ATCGAT	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	3 cut(s)	126, 156, 273
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	2 cut(s)	90, 455
Cfr13I	GGNCC	3 cut(s)	157, 227, 254
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	147, 380, 406
CviAII	CATG	3 cut(s)	79, 341, 365
CviJI	RGCY	9 cut(s)	23, 37, 194, 214, 255, 319, 325, 351, 428
CviKI_1	RGCY	9 cut(s)	23, 37, 194, 214, 255, 319, 325, 351, 428
CviQI	GTAC	3 cut(s)	147, 380, 406
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	157, 227
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	82, 344, 368
FaiI	YATR	6 cut(s)	80, 131, 342, 366, 404, 513
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	78, 340, 364
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	2 cut(s)	89, 454
GluI	GCNGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	3 cut(s)	37, 255, 319
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	2 cut(s)	90, 455
Hin1II	CATG	3 cut(s)	82, 344, 368
Hin6I	GCGC	2 cut(s)	88, 453
HinP1I	GCGC	2 cut(s)	88, 453
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	4 cut(s)	70, 155, 161, 218
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	227, 355
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	3 cut(s)	78, 197, 299
HpyCH4III	ACNGT	2 cut(s)	151, 277
HpyCH4V	TGCA	4 cut(s)	184, 331, 364, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	82, 344, 368
HspAI	GCGC	2 cut(s)	88, 453
KflI	GGGWCCC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	383
LmnI	GCTCC	2 cut(s)	28, 211
LpnPI	CCDG	5 cut(s)	60, 96, 271, 282, 402
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	23, 26, 29
MhlI	GDGCHC	2 cut(s)	104, 353
MluCI	AATT	2 cut(s)	140, 456
MmeI	TCCRAC	2 cut(s)	50, 242
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	258
NlaIII	CATG	3 cut(s)	82, 344, 368
NlaIV	GGNNCC	6 cut(s)	158, 159, 213, 229, 256, 381
NspI	RCATGY	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	6 cut(s)	158, 159, 213, 229, 256, 381
PspPI	GGNCC	3 cut(s)	157, 227, 254
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	148, 381, 407
RsaNI	GTAC	3 cut(s)	147, 380, 406
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	369
Sau96I	GGNCC	3 cut(s)	157, 227, 254
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	104, 353
SetI	ASST	7 cut(s)	25, 60, 115, 208, 310, 381, 430
SinI	GGWCC	2 cut(s)	157, 227
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	2 cut(s)	140, 456
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	151, 277
TaqI	TCGA	3 cut(s)	246, 396, 504
TasI	AATT	2 cut(s)	140, 456
TatI	WGTACW	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	126, 156, 280
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	126, 156, 280
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	157, 227
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.