Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

3076043 .. 3080806

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACGAAGAAGATGCTCCAACTCATCGGCCTCCTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCATGAGAAGGCGCTTCGCAATGGGCACAGAAGCTGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTGGGGGACCCTCTTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTTGGACCCAACTCACTTCTCGTCGACTACGGACCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTGTTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAATGTTCTTTTGTAGGGCTCTGGCAACTTGCATGCTGCAAAGGGGGTACCAAGACAAGCAATCGATTTTATGTACATTGGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

137

Amino Acids

15.03

Weight (kDa)

5.77

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	228
AfaI	GTAC	3 cut(s)	142, 374, 400
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	29, 299
ApeKI	GCWGC	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	151, 209, 236
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	64, 200
AvaII	GGWCC	3 cut(s)	151, 209, 236
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	3 cut(s)	151, 209, 236
BmgT120I	GGNCC	3 cut(s)	151, 209, 236
BmiI	GGNNCC	6 cut(s)	152, 153, 195, 211, 238, 374
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	3 cut(s)	24, 27, 206
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	31, 301
BshNI	GGYRCC	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	31, 301
Bsp1286I	GDGCHC	2 cut(s)	98, 346
Bsp1407I	TGTACA	1 cut(s)	398
BspANI	GGCC	2 cut(s)	31, 301
BspDI	ATCGAT	1 cut(s)	389
BspLI	GGNNCC	6 cut(s)	152, 153, 195, 211, 238, 374
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	145, 259
BstAUI	TGTACA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	31, 301
BsuTUI	ATCGAT	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 150, 255
Cac8I	GCNNGC	1 cut(s)	359
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	151, 209, 236
ClaI	ATCGAT	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	141, 373, 399
CviAII	CATG	3 cut(s)	73, 323, 358
CviJI	RGCY	7 cut(s)	31, 104, 176, 196, 301, 307, 344
CviKI_1	RGCY	7 cut(s)	31, 104, 176, 196, 301, 307, 344
CviQI	GTAC	3 cut(s)	141, 373, 399
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	3 cut(s)	151, 209, 236
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	3 cut(s)	76, 326, 361
FaiI	YATR	5 cut(s)	74, 125, 324, 359, 397
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	72, 322, 357
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	31, 301
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	76, 326, 361
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	64, 200
Hpy166II	GTNNAC	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	72, 179, 281
HpyCH4III	ACNGT	2 cut(s)	145, 259
HpyCH4V	TGCA	4 cut(s)	166, 313, 357, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	76, 326, 361
HspAI	GCGC	1 cut(s)	82
KflI	GGGWCCC	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	22, 193
LpnPI	CCDG	5 cut(s)	54, 90, 253, 264, 332
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	4
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	20, 23
MhlI	GDGCHC	2 cut(s)	98, 346
MluCI	AATT	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	44, 224
MnlI	CCTC	7 cut(s)	42, 43, 45, 48, 165, 184, 330
MseI	TTAA	1 cut(s)	180
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	240
NlaIII	CATG	3 cut(s)	76, 326, 361
NlaIV	GGNNCC	6 cut(s)	152, 153, 195, 211, 238, 374
NspI	RCATGY	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	6 cut(s)	152, 153, 195, 211, 238, 374
PspPI	GGNCC	3 cut(s)	151, 209, 236
PspPPI	RGGWCCY	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	142, 374, 400
RsaNI	GTAC	3 cut(s)	141, 373, 399
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	362
Sau96I	GGNCC	3 cut(s)	151, 209, 236
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	98, 346
SetI	ASST	4 cut(s)	54, 106, 190, 292
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	3 cut(s)	151, 209, 236
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	145, 259
TaqI	TCGA	2 cut(s)	228, 389
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	120, 150, 262
TseI	GCWGC	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	30, 249
TspRI	CASTG	3 cut(s)	120, 150, 262
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	3 cut(s)	151, 209, 236
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.