Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009994

Physical Location & Seq

Genomic Coordinates Reverse (-)

3675735 .. 3680141

Gene Structure 4407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACGAAGAAGAAGCTCCAACTCCTCCGTTTGTGGAGGTGAAATGCGAGAGTTCAGGCGTGAGAAGGCGCTTCGCAATGGGCACAGAAGCAGGTTTCGCAGTGTCAGTCATAAACAGCAAATTGGGTACAGTAGGGGACCCTCACCCTCACCCTCACCCTTCTCTGCACATTGAAGCCGTTAAGGAAGGTGAGGAGCCTATCACTTTCGGACCCAACTCACTTCTTGTCGACTACGGCCCCGGTTGGACATTACACACTGTTACCCAACTCCCATTTTCTGGTGGAGAAGGTATTGTTAGGCCAAAGCCAATGCAAGTTCCTCATGTAATGGGCTCTGACAAGTTGCATGCTACAAAGGGGGTAGTAAAACAAGCAATCGATTTTACGTACATTGGAAAAATAGTGTTAGCTTTTATTTTGATTTTTGTACTTGGCGCAATTTTGACTTTGGTTCTTGAGAACATTCCTAGACTGATGAAGTTGCTCGAACAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFT

Protein Analysis

168

Amino Acids

18.19

Weight (kDa)

5.95

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37480 AT5G37480
fragaria_vesca	FvH4_1g28570
malus_domestica	MD12G1010600.v1.1 MD14G1007700.v1.1
prunus_persica	Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1 Prupe.7G012600_v2.0.a1
pyrus_communis	pycom12g00830
rosa_chinensis	RchiOBHm_Chr3g0496161
rosa_laevigata	RLG00000022556
rosa_multiflora	Rmu_sc0003733.1_g000053 Rmu_sc0006695.1_g000020
rosa_roxburghii	Rroxscaffold_6G00389510
rosa_rugosa	Rorug03G0279900 Rorug03G0280000
rosa_samantha	Rh3AG327000 Rh3BG363000 Rh3CG359900 Rh3DG363100
rosa_wichuraiana	Rw3G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	130, 392, 432
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	17, 413
AluI	AGCT	2 cut(s)	17, 413
AoxI	GGCC	2 cut(s)	238, 302
AspLEI	GCGC	2 cut(s)	72, 440
AspS9I	GGNCC	3 cut(s)	139, 212, 239
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	5 cut(s)	52, 137, 143, 149, 203
AvaII	GGWCC	2 cut(s)	139, 212
BaeGI	GKGCMC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	164, 253
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	139, 212
BmgT120I	GGNCC	3 cut(s)	139, 212, 239
BmiI	GGNNCC	5 cut(s)	140, 141, 198, 214, 241
BmrFI	CCNGG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	15, 209
BseSI	GKGCMC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	240, 304
BshVI	ATCGAT	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	240, 304
Bsp1286I	GDGCHC	2 cut(s)	86, 338
BspANI	GGCC	2 cut(s)	240, 304
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	5 cut(s)	140, 141, 198, 214, 241
BspMI	ACCTGC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	133, 262
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	86
BstSNI	TACGTA	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	240, 304
BsuTUI	ATCGAT	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	108, 258
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	72, 440
Cfr13I	GGNCC	3 cut(s)	139, 212, 239
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	129, 391, 431
CviAII	CATG	2 cut(s)	326, 350
CviJI	RGCY	8 cut(s)	17, 179, 199, 240, 304, 310, 336, 413
CviKI_1	RGCY	8 cut(s)	17, 179, 199, 240, 304, 310, 336, 413
CviQI	GTAC	3 cut(s)	129, 391, 431
Eco105I	TACGTA	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	139, 212
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	2 cut(s)	329, 353
FaiI	YATR	4 cut(s)	113, 327, 351, 498
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	325, 349
FblI	GTMKAC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	71, 439
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	240, 304
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	2 cut(s)	72, 440
Hin1II	CATG	2 cut(s)	329, 353
Hin6I	GCGC	2 cut(s)	70, 438
HinP1I	GCGC	2 cut(s)	70, 438
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	5 cut(s)	52, 137, 143, 149, 203
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	212, 340
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	60, 171, 182, 284
HpyCH4III	ACNGT	2 cut(s)	133, 262
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	169, 316, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	329, 353
HspAI	GCGC	2 cut(s)	70, 438
KflI	GGGWCCC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	22, 196
LpnPI	CCDG	4 cut(s)	42, 78, 256, 267
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	20, 23
MhlI	GDGCHC	2 cut(s)	86, 338
MluCI	AATT	2 cut(s)	122, 441
MmeI	TCCRAC	2 cut(s)	44, 227
MnlI	CCTC	7 cut(s)	31, 36, 153, 159, 165, 187, 333
MseI	TTAA	1 cut(s)	183
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	243
NlaIII	CATG	2 cut(s)	329, 353
NlaIV	GGNNCC	5 cut(s)	140, 141, 198, 214, 241
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspN4I	GGNNCC	5 cut(s)	140, 141, 198, 214, 241
PspPI	GGNCC	3 cut(s)	139, 212, 239
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	3 cut(s)	130, 392, 432
RsaNI	GTAC	3 cut(s)	129, 391, 431
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	183
Sau96I	GGNCC	3 cut(s)	139, 212, 239
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	86, 338
SetI	ASST	7 cut(s)	19, 42, 97, 193, 295, 392, 415
SinI	GGWCC	2 cut(s)	139, 212
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SnaBI	TACGTA	1 cut(s)	390
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	122, 441
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	133, 262
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	231, 381, 489
TasI	AATT	2 cut(s)	122, 441
TatI	WGTACW	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	108, 265
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	108, 265
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	139, 212
XceI	RCATGY	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.