Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005254

Physical Location & Seq

Genomic Coordinates Forward (+)

15705706 .. 15708274

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATGGGTAGCTTGAAAATAATATCTCCACCACCTCCGGCGACAAGATTCCGGCAACGAGTAACGGCGAACGGAGATGGGTTTCCGACATTTCTTCCGAAGGAGATACAAAACATAAAAGATCCATTCGCAAGAGCTTTAGCTCAAAGGATTGTACGAATTCCTGTTCCTCTTCAGATGGGAAACTTTAGAGGCAGTGTAATGAGTAGCTGTATCAAACCACTTGTTCAATTACACGACAAAAGTCCCGTTGTTCTTCTCCATTGTTTCGACAGTTCTTGTCTTGAATGGAGACGTACTTATCCTCTGCTTGAACAAGCTTGTCTTGAGACTTGGGCTATTGATGTTCTTGGTTGGGGATTCTCAGATCTTGAGAAACTTCCACCATGTGATGCAGCATCTAAGCGACATCATTTATTCGAGCTTTGGAAAACATATATCAAACGACCAATGATTTTAGTTGGACCAAGCTTAGGAGCAACCGTAGCTGTTGATTTCACTGCTACTTACCCGGAAGCTGTTGATAAATTGGTTCTTATTAATGCCAATGCGTATTCAGAAGGAACCGGTCGGCTTAAAGAGTTACCAAAATCCATCGCTTACGCTGGGGTTAAGTTGTTAAAGTCATTCCCTCTGCGCCTTTTGGCCAATGTCCTAGCCTTTTGTTCCTCGCCCTTATCCGAGAACATAGATTGGACTAATATTGGTCGGTTACATTGTCAAATGCCGTGGTGGGAGGATGCTATGGTCGATTTTATGATTAGCGGGGGCTATAACGTCGCGTCACACATCAAACATATTGACCATAAGACGCTCGTGGTATGCAGTGAGAACGATCAGATAGTTAGCAACCAGCTCTCAGTTAAATTGTTGTGTGAGCTAGCAAATGCGGTTTTGCGGGAAGTACCAGATTCCGGTCATCTTCCACATGTTGAGAATCCTAAACACATTGTGAAGCTGATATCAGATTTCGCCAGTGGAAAGCTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

330

Amino Acids

36.85

Weight (kDa)

8.51

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	83 - 178	1e-06	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	84 - 306	4.2e-12	Alpha/beta hydrolase family
Hydrolase_4	PF12146	84 - 299	3.6e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39220 AT5G39220
fragaria_vesca	FvH4_6g46920 FvH4_6g46920 FvH4_6g46920 FvH4_6g46920
malus_domestica	MD09G1066200.v1.1 MD17G1058900.v1.1 MD17G1059000.v1.1 MD17G1059300.v1.1
prunus_persica	Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1 Prupe.3G255300_v2.0.a1
pyrus_communis	pycom17g05920
rosa_chinensis	RchiOBHm_Chr2g0165891
rosa_laevigata	RLG00000021568
rosa_multiflora	Rmu_sc0006218.1_g000009
rosa_roxburghii	Rroxscaffold_2G00085330
rosa_rugosa	Rorug02G0518900 Rorug02G0519000 Rorug02G0519100
rosa_samantha	Rh2AG584600 Rh2BG596400 Rh2CG567300 Rh2DG606300 Rh2DG606400 Rh2DG606500
rosa_wichuraiana	Rw2G048740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	782
AciI	CCGC	3 cut(s)	765, 890, 898
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	2 cut(s)	389, 952
AfaI	GTAC	3 cut(s)	156, 298, 906
AfiI	CCNNNNNNNGG	2 cut(s)	473, 914
AflIII	ACRYGT	1 cut(s)	928
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	4 cut(s)	16, 230, 287, 314
Alw26I	GTCTC	2 cut(s)	286, 323
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	159
AseI	ATTAAT	1 cut(s)	540
AsiGI	ACCGGT	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	512
AsuNHI	GCTAGC	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	647
BauI	CACGAG	1 cut(s)	815
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	3 cut(s)	71, 172, 602
BceAI	ACGGC	2 cut(s)	81, 712
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	286, 323
BfaI	CTAG	2 cut(s)	656, 881
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	3 cut(s)	382, 407, 730
BmtI	GCTAGC	1 cut(s)	884
BoxI	GACNNNNGTC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	347, 392
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	2 cut(s)	566, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 914
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	975
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	2 cut(s)	473, 914
BseMII	CTCAG	2 cut(s)	378, 873
BseNI	ACTGG	1 cut(s)	975
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	1 cut(s)	647
BshTI	ACCGGT	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	571
BsiSI	CCGG	5 cut(s)	38, 52, 512, 567, 915
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	473, 914
BsmAI	GTCTC	2 cut(s)	286, 323
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	647
Bsp143I	GATC	3 cut(s)	121, 367, 835
BspACI	CCGC	3 cut(s)	765, 890, 898
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	2 cut(s)	377, 872
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	884
BspPI	GGATC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	975
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	3 cut(s)	121, 367, 835
BssSI	CACGAG	1 cut(s)	815
Bst2BI	CACGAG	1 cut(s)	815
Bst4CI	ACNGT	2 cut(s)	275, 484
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	4 cut(s)	364, 402, 472, 859
BstDSI	CCRYGG	1 cut(s)	728
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	3 cut(s)	124, 370, 838
BstMAI	GTCTC	2 cut(s)	286, 323
BstMBI	GATC	3 cut(s)	121, 367, 835
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	932
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	407
BstX2I	RGATCY	2 cut(s)	121, 367
BstYI	RGATCY	2 cut(s)	121, 367
BsuRI	GGCC	1 cut(s)	647
BtgI	CCRYGG	1 cut(s)	728
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	3 cut(s)	202, 498, 832
BtsIMutI	CAGTG	4 cut(s)	202, 498, 832, 982
Cac8I	GCNNGC	1 cut(s)	882
CfoI	GCGC	1 cut(s)	639
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	2 cut(s)	771, 820
Csp6I	GTAC	3 cut(s)	155, 297, 905
CspAI	ACCGGT	1 cut(s)	566
CspCI	CAANNNNNGTGG	2 cut(s)	710, 745
CviAII	CATG	2 cut(s)	387, 929
CviQI	GTAC	3 cut(s)	155, 297, 905
DdeI	CTNAG	4 cut(s)	364, 402, 472, 859
DpnI	GATC	3 cut(s)	123, 369, 837
DpnII	GATC	3 cut(s)	121, 367, 835
DraIII	CACNNNGTG	2 cut(s)	389, 952
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	963
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	963
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	390, 932
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	386, 928
FauI	CCCGC	2 cut(s)	758, 891
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	752
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	656, 881
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	5 cut(s)	38, 52, 512, 567, 915
HgaI	GACGC	2 cut(s)	771, 820
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	390, 932
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	318, 469
HinfI	GANTC	4 cut(s)	48, 360, 911, 937
HpaII	CCGG	5 cut(s)	38, 52, 512, 567, 915
Hpy188I	TCNGA	8 cut(s)	87, 99, 177, 367, 559, 682, 840, 967
Hpy188III	TCNNGA	3 cut(s)	284, 326, 371
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	2 cut(s)	94, 554
HpyCH4III	ACNGT	2 cut(s)	275, 484
HpyCH4IV	ACGT	2 cut(s)	295, 777
HpyCH4V	TGCA	2 cut(s)	395, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	4 cut(s)	364, 402, 472, 859
HpySE526I	ACGT	2 cut(s)	295, 777
Hsp92II	CATG	2 cut(s)	390, 932
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	121, 367, 835
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	3 cut(s)	382, 407, 730
MaeI	CTAG	2 cut(s)	656, 881
MaeII	ACGT	2 cut(s)	295, 777
MaeIII	GTNAC	4 cut(s)	61, 582, 711, 783
MalI	GATC	3 cut(s)	123, 369, 837
MboI	GATC	3 cut(s)	121, 367, 835
MboII	GAAGA	4 cut(s)	86, 164, 248, 914
MflI	RGATCY	2 cut(s)	121, 367
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	159, 230, 527, 866
MluNI	TGGCCA	1 cut(s)	647
MmeI	TCCRAC	2 cut(s)	110, 442
MnlI	CCTC	7 cut(s)	45, 180, 185, 315, 642, 679, 730
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	5 cut(s)	540, 576, 612, 620, 864
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	5 cut(s)	38, 52, 512, 567, 915
MspR9I	CCNGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	121, 367, 835
NheI	GCTAGC	1 cut(s)	880
NlaIII	CATG	2 cut(s)	390, 932
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	932
PciI	ACATGT	1 cut(s)	928
PfeI	GAWTC	4 cut(s)	48, 360, 911, 937
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	928
PshAI	GACNNNNGTC	1 cut(s)	243
PshBI	ATTAAT	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	121, 367
RsaI	GTAC	3 cut(s)	156, 298, 906
RsaNI	GTAC	3 cut(s)	155, 297, 905
SaqAI	TTAA	5 cut(s)	540, 576, 612, 620, 864
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	121, 367, 835
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	512
SfaNI	GCATC	3 cut(s)	382, 407, 730
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	326, 371
SmoI	CTYRAG	2 cut(s)	326, 371
Sse9I	AATT	4 cut(s)	159, 230, 527, 866
SsiI	CCGC	3 cut(s)	765, 890, 898
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	2 cut(s)	656, 881
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	275, 484
TaiI	ACGT	2 cut(s)	298, 780
TaqI	TCGA	3 cut(s)	270, 420, 750
TasI	AATT	4 cut(s)	159, 230, 527, 866
TfiI	GAWTC	4 cut(s)	48, 360, 911, 937
Tru1I	TTAA	5 cut(s)	540, 576, 612, 620, 864
Tru9I	TTAA	5 cut(s)	540, 576, 612, 620, 864
TscAI	CASTG	4 cut(s)	202, 505, 832, 982
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	783
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	4 cut(s)	202, 505, 832, 982
VpaK11BI	GGWCC	1 cut(s)	464
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	932
XspI	CTAG	2 cut(s)	656, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.